Package Gnumed :: Package business :: Module gmPerson
[frames] | no frames]

Source Code for Module Gnumed.business.gmPerson

   1  # -*- coding: utf-8 -*- 
   2   
   3  from __future__ import print_function 
   4   
   5  """GNUmed patient objects. 
   6   
   7  This is a patient object intended to let a useful client-side 
   8  API crystallize from actual use in true XP fashion. 
   9  """ 
  10  #============================================================ 
  11  __author__ = "K.Hilbert <Karsten.Hilbert@gmx.net>" 
  12  __license__ = "GPL" 
  13   
  14  # std lib 
  15  import sys 
  16  import os.path 
  17  import time 
  18  import re as regex 
  19  import datetime as pyDT 
  20  import threading 
  21  import logging 
  22  import io 
  23  import inspect 
  24  from xml.etree import ElementTree as etree 
  25   
  26   
  27  # GNUmed 
  28  if __name__ == '__main__': 
  29          logging.basicConfig(level = logging.DEBUG) 
  30          sys.path.insert(0, '../../') 
  31  from Gnumed.pycommon import gmExceptions 
  32  from Gnumed.pycommon import gmDispatcher 
  33  from Gnumed.pycommon import gmBorg 
  34  from Gnumed.pycommon import gmI18N 
  35  if __name__ == '__main__': 
  36          gmI18N.activate_locale() 
  37          gmI18N.install_domain() 
  38  from Gnumed.pycommon import gmNull 
  39  from Gnumed.pycommon import gmBusinessDBObject 
  40  from Gnumed.pycommon import gmTools 
  41  from Gnumed.pycommon import gmPG2 
  42  from Gnumed.pycommon import gmDateTime 
  43  from Gnumed.pycommon import gmMatchProvider 
  44  from Gnumed.pycommon import gmLog2 
  45  from Gnumed.pycommon import gmHooks 
  46   
  47  from Gnumed.business import gmDemographicRecord 
  48  from Gnumed.business import gmClinicalRecord 
  49  from Gnumed.business import gmXdtMappings 
  50  from Gnumed.business import gmProviderInbox 
  51  from Gnumed.business import gmExportArea 
  52  from Gnumed.business import gmBilling 
  53  from Gnumed.business import gmAutoHints 
  54  from Gnumed.business.gmDocuments import cDocumentFolder 
  55   
  56   
  57  _log = logging.getLogger('gm.person') 
  58   
  59  __gender_list = None 
  60  __gender_idx = None 
  61   
  62  __gender2salutation_map = None 
  63  __gender2string_map = None 
  64   
  65  #============================================================ 
  66  _MERGE_SCRIPT_HEADER = """-- GNUmed patient merge script 
  67  -- created: %(date)s 
  68  -- patient to keep : #%(pat2keep)s 
  69  -- patient to merge: #%(pat2del)s 
  70  -- 
  71  -- You can EASILY cause mangled data by uncritically applying this script, so ... 
  72  -- ... BE POSITIVELY SURE YOU UNDERSTAND THE FULL EXTENT OF WHAT IT DOES ! 
  73   
  74   
  75  --set default_transaction_read_only to off; 
  76   
  77  BEGIN; 
  78  """ 
  79   
  80  #============================================================ 
81 -def external_id_exists(pk_issuer, value):
82 cmd = 'SELECT COUNT(1) FROM dem.lnk_identity2ext_id WHERE fk_origin = %(issuer)s AND external_id = %(val)s' 83 args = {'issuer': pk_issuer, 'val': value} 84 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False) 85 return rows[0][0]
86 87 #============================================================
88 -def get_potential_person_dupes(lastnames, dob, firstnames=None, active_only=True):
89 args = { 90 'last': lastnames, 91 'dob': dob 92 } 93 where_parts = [ 94 "lastnames = %(last)s", 95 "dem.date_trunc_utc('day', dob) = dem.date_trunc_utc('day', %(dob)s)" 96 ] 97 if firstnames is not None: 98 if firstnames.strip() != '': 99 #where_parts.append(u"position(%(first)s in firstnames) = 1") 100 where_parts.append("firstnames ~* %(first)s") 101 args['first'] = '\\m' + firstnames 102 if active_only: 103 cmd = """SELECT COUNT(1) FROM dem.v_active_persons WHERE %s""" % ' AND '.join(where_parts) 104 else: 105 cmd = """SELECT COUNT(1) FROM dem.v_all_persons WHERE %s""" % ' AND '.join(where_parts) 106 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False) 107 return rows[0][0]
108 109 #============================================================
110 -def this_person_exists(lastnames, firstnames, dob, comment):
111 # backend also looks at gender (IOW, only fails on same-gender dupes) 112 # implement in plpgsql and re-use in both validation trigger and here 113 if comment is not None: 114 comment = comment.strip() 115 if comment == u'': 116 comment = None 117 args = { 118 'last': lastnames.strip(), 119 'first': firstnames.strip(), 120 'dob': dob, 121 'cmt': comment 122 } 123 where_parts = [ 124 u'lower(lastnames) = lower(%(last)s)', 125 u'lower(firstnames) = lower(%(first)s)', 126 u"dem.date_trunc_utc('day', dob) IS NOT DISTINCT FROM dem.date_trunc_utc('day', %(dob)s)", 127 u'lower(comment) IS NOT DISTINCT FROM lower(%(cmt)s)' 128 ] 129 cmd = u"SELECT COUNT(1) FROM dem.v_persons WHERE %s" % u' AND '.join(where_parts) 130 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False) 131 return rows[0][0]
132 133 #============================================================ 134 # FIXME: make this work as a mapping type, too
135 -class cDTO_person(object):
136
137 - def __init__(self):
138 self.identity = None 139 self.external_ids = [] 140 self.comm_channels = [] 141 self.addresses = [] 142 143 self.firstnames = None 144 self.lastnames = None 145 self.title = None 146 self.gender = None 147 self.dob = None 148 self.dob_is_estimated = False 149 self.source = self.__class__.__name__ 150 151 self.dob_formats = None 152 self.dob_tz = None
153 154 #-------------------------------------------------------- 155 # external API 156 #--------------------------------------------------------
157 - def keys(self):
158 return 'firstnames lastnames dob gender title'.split()
159 #--------------------------------------------------------
160 - def delete_from_source(self):
161 pass
162 #--------------------------------------------------------
163 - def _is_unique(self):
164 where_snippets = [ 165 'firstnames = %(first)s', 166 'lastnames = %(last)s' 167 ] 168 args = { 169 'first': self.firstnames, 170 'last': self.lastnames 171 } 172 if self.dob is not None: 173 where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)") 174 args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59) 175 if self.gender is not None: 176 where_snippets.append('gender = %(sex)s') 177 args['sex'] = self.gender 178 cmd = 'SELECT count(1) FROM dem.v_person_names WHERE %s' % ' AND '.join(where_snippets) 179 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False) 180 181 return rows[0][0] == 1
182 183 is_unique = property(_is_unique) 184 185 #--------------------------------------------------------
186 - def _exists(self):
187 where_snippets = [ 188 'firstnames = %(first)s', 189 'lastnames = %(last)s' 190 ] 191 args = { 192 'first': self.firstnames, 193 'last': self.lastnames 194 } 195 if self.dob is not None: 196 where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)") 197 args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59) 198 if self.gender is not None: 199 where_snippets.append('gender = %(sex)s') 200 args['sex'] = self.gender 201 cmd = 'SELECT count(1) FROM dem.v_person_names WHERE %s' % ' AND '.join(where_snippets) 202 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False) 203 204 return rows[0][0] > 0
205 206 exists = property(_exists) 207 208 #--------------------------------------------------------
209 - def get_candidate_identities(self, can_create=False):
210 """Generate generic queries. 211 212 - not locale dependant 213 - data -> firstnames, lastnames, dob, gender 214 215 shall we mogrify name parts ? probably not as external 216 sources should know what they do 217 218 finds by inactive name, too, but then shows 219 the corresponding active name ;-) 220 221 Returns list of matching identities (may be empty) 222 or None if it was told to create an identity but couldn't. 223 """ 224 where_snippets = [] 225 args = {} 226 227 where_snippets.append('lower(firstnames) = lower(%(first)s)') 228 args['first'] = self.firstnames 229 230 where_snippets.append('lower(lastnames) = lower(%(last)s)') 231 args['last'] = self.lastnames 232 233 if self.dob is not None: 234 where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)") 235 args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59) 236 237 if self.gender is not None: 238 where_snippets.append('lower(gender) = lower(%(sex)s)') 239 args['sex'] = self.gender 240 241 # FIXME: allow disabled persons ? 242 cmd = """ 243 SELECT *, '%s' AS match_type 244 FROM dem.v_active_persons 245 WHERE 246 pk_identity IN ( 247 SELECT pk_identity FROM dem.v_person_names WHERE %s 248 ) 249 ORDER BY lastnames, firstnames, dob""" % ( 250 _('external patient source (name, gender, date of birth)'), 251 ' AND '.join(where_snippets) 252 ) 253 254 try: 255 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx=True) 256 except Exception: 257 _log.error('cannot get candidate identities for dto "%s"' % self) 258 _log.exception('query %s' % cmd) 259 rows = [] 260 261 if len(rows) == 0: 262 _log.debug('no candidate identity matches found') 263 if not can_create: 264 return [] 265 ident = self.import_into_database() 266 if ident is None: 267 return None 268 identities = [ident] 269 else: 270 identities = [ cPerson(row = {'pk_field': 'pk_identity', 'data': row, 'idx': idx}) for row in rows ] 271 272 return identities
273 #--------------------------------------------------------
274 - def import_into_database(self):
275 """Imports self into the database.""" 276 277 self.identity = create_identity ( 278 firstnames = self.firstnames, 279 lastnames = self.lastnames, 280 gender = self.gender, 281 dob = self.dob 282 ) 283 284 if self.identity is None: 285 return None 286 287 self.identity['dob_is_estimated'] = self.dob_is_estimated is True 288 if self.title is not None: 289 self.identity['title'] = self.title 290 self.identity.save() 291 292 for ext_id in self.external_ids: 293 try: 294 self.identity.add_external_id ( 295 type_name = ext_id['name'], 296 value = ext_id['value'], 297 issuer = ext_id['issuer'], 298 comment = ext_id['comment'] 299 ) 300 except Exception: 301 _log.exception('cannot import <external ID> from external data source') 302 gmLog2.log_stack_trace() 303 304 for comm in self.comm_channels: 305 try: 306 self.identity.link_comm_channel ( 307 comm_medium = comm['channel'], 308 url = comm['url'] 309 ) 310 except Exception: 311 _log.exception('cannot import <comm channel> from external data source') 312 gmLog2.log_stack_trace() 313 314 for adr in self.addresses: 315 try: 316 self.identity.link_address ( 317 adr_type = adr['type'], 318 number = adr['number'], 319 subunit = adr['subunit'], 320 street = adr['street'], 321 postcode = adr['zip'], 322 urb = adr['urb'], 323 region_code = adr['region_code'], 324 country_code = adr['country_code'] 325 ) 326 except Exception: 327 _log.exception('cannot import <address> from external data source') 328 gmLog2.log_stack_trace() 329 330 return self.identity
331 #--------------------------------------------------------
332 - def import_extra_data(self, *args, **kwargs):
333 pass
334 #--------------------------------------------------------
335 - def remember_external_id(self, name=None, value=None, issuer=None, comment=None):
336 value = value.strip() 337 if value == '': 338 return 339 name = name.strip() 340 if name == '': 341 raise ValueError(_('<name> cannot be empty')) 342 issuer = issuer.strip() 343 if issuer == '': 344 raise ValueError(_('<issuer> cannot be empty')) 345 self.external_ids.append({'name': name, 'value': value, 'issuer': issuer, 'comment': comment})
346 #--------------------------------------------------------
347 - def remember_comm_channel(self, channel=None, url=None):
348 url = url.strip() 349 if url == '': 350 return 351 channel = channel.strip() 352 if channel == '': 353 raise ValueError(_('<channel> cannot be empty')) 354 self.comm_channels.append({'channel': channel, 'url': url})
355 #--------------------------------------------------------
356 - def remember_address(self, number=None, street=None, urb=None, region_code=None, zip=None, country_code=None, adr_type=None, subunit=None):
357 number = number.strip() 358 if number == '': 359 raise ValueError(_('<number> cannot be empty')) 360 street = street.strip() 361 if street == '': 362 raise ValueError(_('<street> cannot be empty')) 363 urb = urb.strip() 364 if urb == '': 365 raise ValueError(_('<urb> cannot be empty')) 366 zip = zip.strip() 367 if zip == '': 368 raise ValueError(_('<zip> cannot be empty')) 369 country_code = country_code.strip() 370 if country_code == '': 371 raise ValueError(_('<country_code> cannot be empty')) 372 if region_code is not None: 373 region_code = region_code.strip() 374 if region_code in [None, '']: 375 region_code = '??' 376 self.addresses.append ({ 377 'type': adr_type, 378 'number': number, 379 'subunit': subunit, 380 'street': street, 381 'zip': zip, 382 'urb': urb, 383 'region_code': region_code, 384 'country_code': country_code 385 })
386 #-------------------------------------------------------- 387 # customizing behaviour 388 #--------------------------------------------------------
389 - def __str__(self):
390 return '<%s (%s) @ %s: %s %s (%s) %s%s>' % ( 391 self.__class__.__name__, 392 self.source, 393 id(self), 394 self.lastnames.upper(), 395 self.firstnames, 396 self.gender, 397 gmTools.bool2subst(self.dob_is_estimated, '~', '', ''), 398 self.dob 399 )
400 #--------------------------------------------------------
401 - def __setattr__(self, attr, val):
402 """Do some sanity checks on self.* access.""" 403 404 if attr == 'gender': 405 if val is None: 406 object.__setattr__(self, attr, val) 407 return 408 glist, idx = get_gender_list() 409 for gender in glist: 410 if str(val) in [gender[0], gender[1], gender[2], gender[3]]: 411 val = gender[idx['tag']] 412 object.__setattr__(self, attr, val) 413 return 414 raise ValueError('invalid gender: [%s]' % val) 415 416 if attr == 'dob': 417 if val is not None: 418 if isinstance(val, str): 419 dob = self.__parse_dob_str(val) 420 if dob is None: 421 raise ValueError('cannot parse DOB [%s]' % val) 422 val = dob 423 if not isinstance(val, pyDT.datetime): 424 raise TypeError('invalid type for DOB (must be datetime.datetime): %s [%s]' % (type(val), val)) 425 if val.tzinfo is None: 426 raise ValueError('datetime.datetime instance is lacking a time zone: [%s]' % val.isoformat()) 427 428 object.__setattr__(self, attr, val) 429 return
430 #--------------------------------------------------------
431 - def __getitem__(self, attr):
432 return getattr(self, attr)
433 #--------------------------------------------------------
434 - def __parse_dob_str(self, dob_str):
435 if self.dob_formats is None: 436 return None 437 for dob_format in self.dob_formats: 438 try: 439 dob = pyDT.datetime.strptime(dob_str, dob_format) 440 except ValueError: 441 _log.exception('cannot parse DOB [%s] with [%s]', dob_str, dob_format) 442 continue 443 if self.dob_tz is None: 444 raise ValueError('lacking TZ information in DOB [%s] and/or format [%s]' % (dob_str, self.dob_format)) 445 dob = dob.replace(tzinfo = self.dob_tz) 446 return dob 447 return None
448 449 #============================================================
450 -class cPersonName(gmBusinessDBObject.cBusinessDBObject):
451 _cmd_fetch_payload = "SELECT * FROM dem.v_person_names WHERE pk_name = %s" 452 _cmds_store_payload = [ 453 """UPDATE dem.names SET 454 active = FALSE 455 WHERE 456 %(active_name)s IS TRUE -- act only when needed and only 457 AND 458 id_identity = %(pk_identity)s -- on names of this identity 459 AND 460 active IS TRUE -- which are active 461 AND 462 id != %(pk_name)s -- but NOT *this* name 463 """, 464 """update dem.names set 465 active = %(active_name)s, 466 preferred = %(preferred)s, 467 comment = %(comment)s 468 where 469 id = %(pk_name)s and 470 id_identity = %(pk_identity)s and -- belt and suspenders 471 xmin = %(xmin_name)s""", 472 """select xmin as xmin_name from dem.names where id = %(pk_name)s""" 473 ] 474 _updatable_fields = ['active_name', 'preferred', 'comment'] 475 #--------------------------------------------------------
476 - def __setitem__(self, attribute, value):
477 if attribute == 'active_name': 478 # cannot *directly* deactivate a name, only indirectly 479 # by activating another one 480 # FIXME: should be done at DB level 481 if self._payload[self._idx['active_name']] is True: 482 return 483 gmBusinessDBObject.cBusinessDBObject.__setitem__(self, attribute, value)
484 #--------------------------------------------------------
485 - def _get_description(self):
486 return '%(last)s, %(title)s %(first)s%(nick)s' % { 487 'last': self._payload[self._idx['lastnames']], 488 'title': gmTools.coalesce ( 489 self._payload[self._idx['title']], 490 map_gender2salutation(self._payload[self._idx['gender']]) 491 ), 492 'first': self._payload[self._idx['firstnames']], 493 'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'", '%s') 494 }
495 496 description = property(_get_description, lambda x:x)
497 498 #============================================================ 499 _SQL_get_active_person = "SELECT * FROM dem.v_active_persons WHERE pk_identity = %s" 500 _SQL_get_any_person = "SELECT * FROM dem.v_all_persons WHERE pk_identity = %s" 501
502 -class cPerson(gmBusinessDBObject.cBusinessDBObject):
503 _cmd_fetch_payload = _SQL_get_any_person 504 _cmds_store_payload = [ 505 """UPDATE dem.identity SET 506 gender = %(gender)s, 507 dob = %(dob)s, 508 dob_is_estimated = %(dob_is_estimated)s, 509 tob = %(tob)s, 510 title = gm.nullify_empty_string(%(title)s), 511 fk_marital_status = %(pk_marital_status)s, 512 deceased = %(deceased)s, 513 emergency_contact = gm.nullify_empty_string(%(emergency_contact)s), 514 fk_emergency_contact = %(pk_emergency_contact)s, 515 fk_primary_provider = %(pk_primary_provider)s, 516 comment = gm.nullify_empty_string(%(comment)s) 517 WHERE 518 pk = %(pk_identity)s and 519 xmin = %(xmin_identity)s 520 RETURNING 521 xmin AS xmin_identity""" 522 ] 523 _updatable_fields = [ 524 "title", 525 "dob", 526 "tob", 527 "gender", 528 "pk_marital_status", 529 'deceased', 530 'emergency_contact', 531 'pk_emergency_contact', 532 'pk_primary_provider', 533 'comment', 534 'dob_is_estimated' 535 ] 536 #--------------------------------------------------------
537 - def _get_ID(self):
538 return self._payload[self._idx['pk_identity']]
539 - def _set_ID(self, value):
540 raise AttributeError('setting ID of identity is not allowed')
541 542 ID = property(_get_ID, _set_ID) 543 544 #--------------------------------------------------------
545 - def __setitem__(self, attribute, value):
546 547 if attribute == 'dob': 548 if value is not None: 549 550 if isinstance(value, pyDT.datetime): 551 if value.tzinfo is None: 552 raise ValueError('datetime.datetime instance is lacking a time zone: [%s]' % dt.isoformat()) 553 else: 554 raise TypeError('[%s]: type [%s] (%s) invalid for attribute [dob], must be datetime.datetime or None' % (self.__class__.__name__, type(value), value)) 555 556 # compare DOB at seconds level 557 if self._payload[self._idx['dob']] is not None: 558 old_dob = gmDateTime.pydt_strftime ( 559 self._payload[self._idx['dob']], 560 format = '%Y %m %d %H %M %S', 561 accuracy = gmDateTime.acc_seconds 562 ) 563 new_dob = gmDateTime.pydt_strftime ( 564 value, 565 format = '%Y %m %d %H %M %S', 566 accuracy = gmDateTime.acc_seconds 567 ) 568 if new_dob == old_dob: 569 return 570 571 gmBusinessDBObject.cBusinessDBObject.__setitem__(self, attribute, value)
572 573 #--------------------------------------------------------
574 - def cleanup(self):
575 pass
576 577 #--------------------------------------------------------
578 - def _get_is_patient(self):
579 return identity_is_patient(self._payload[self._idx['pk_identity']])
580
581 - def _set_is_patient(self, turn_into_patient):
582 if turn_into_patient: 583 return turn_identity_into_patient(self._payload[self._idx['pk_identity']]) 584 return False
585 586 is_patient = property(_get_is_patient, _set_is_patient) 587 588 #--------------------------------------------------------
589 - def _get_as_patient(self):
590 return cPatient(self._payload[self._idx['pk_identity']])
591 592 as_patient = property(_get_as_patient, lambda x:x) 593 594 #--------------------------------------------------------
595 - def _get_staff_id(self):
596 cmd = "SELECT pk FROM dem.staff WHERE fk_identity = %(pk)s" 597 args = {'pk': self._payload[self._idx['pk_identity']]} 598 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False) 599 if len(rows) == 0: 600 return None 601 return rows[0][0]
602 603 staff_id = property(_get_staff_id, lambda x:x) 604 605 #-------------------------------------------------------- 606 # identity API 607 #--------------------------------------------------------
608 - def _get_gender_symbol(self):
609 return map_gender2symbol[self._payload[self._idx['gender']]]
610 611 gender_symbol = property(_get_gender_symbol, lambda x:x) 612 #--------------------------------------------------------
613 - def _get_gender_string(self):
614 return map_gender2string(gender = self._payload[self._idx['gender']])
615 616 gender_string = property(_get_gender_string, lambda x:x) 617 #--------------------------------------------------------
618 - def _get_gender_list(self):
619 gender_list, tmp = get_gender_list() 620 return gender_list
621 622 gender_list = property(_get_gender_list, lambda x:x) 623 #--------------------------------------------------------
624 - def get_active_name(self):
625 names = self.get_names(active_only = True) 626 if len(names) == 0: 627 _log.error('cannot retrieve active name for patient [%s]', self._payload[self._idx['pk_identity']]) 628 return None 629 return names[0]
630 631 active_name = property(get_active_name, lambda x:x) 632 #--------------------------------------------------------
633 - def get_names(self, active_only=False, exclude_active=False):
634 635 args = {'pk_pat': self._payload[self._idx['pk_identity']]} 636 where_parts = ['pk_identity = %(pk_pat)s'] 637 if active_only: 638 where_parts.append('active_name is True') 639 if exclude_active: 640 where_parts.append('active_name is False') 641 cmd = """ 642 SELECT * 643 FROM dem.v_person_names 644 WHERE %s 645 ORDER BY active_name DESC, lastnames, firstnames 646 """ % ' AND '.join(where_parts) 647 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True) 648 649 if len(rows) == 0: 650 # no names registered for patient 651 return [] 652 653 names = [ cPersonName(row = {'idx': idx, 'data': r, 'pk_field': 'pk_name'}) for r in rows ] 654 return names
655 #--------------------------------------------------------
656 - def get_description_gender(self, with_nickname=True):
657 if with_nickname: 658 template = _('%(last)s,%(title)s %(first)s%(nick)s (%(sex)s)') 659 else: 660 template = _('%(last)s,%(title)s %(first)s (%(sex)s)') 661 return template % { 662 'last': self._payload[self._idx['lastnames']], 663 'title': gmTools.coalesce(self._payload[self._idx['title']], '', ' %s'), 664 'first': self._payload[self._idx['firstnames']], 665 'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'"), 666 'sex': self.gender_symbol 667 }
668 669 #--------------------------------------------------------
670 - def get_description(self, with_nickname=True):
671 if with_nickname: 672 template = _('%(last)s,%(title)s %(first)s%(nick)s') 673 else: 674 template = _('%(last)s,%(title)s %(first)s') 675 return template % { 676 'last': self._payload[self._idx['lastnames']], 677 'title': gmTools.coalesce(self._payload[self._idx['title']], '', ' %s'), 678 'first': self._payload[self._idx['firstnames']], 679 'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'") 680 }
681 682 #--------------------------------------------------------
683 - def add_name(self, firstnames, lastnames, active=True):
684 """Add a name. 685 686 @param firstnames The first names. 687 @param lastnames The last names. 688 @param active When True, the new name will become the active one (hence setting other names to inactive) 689 @type active A bool instance 690 """ 691 name = create_name(self.ID, firstnames, lastnames, active) 692 if active: 693 self.refetch_payload() 694 return name
695 696 #--------------------------------------------------------
697 - def delete_name(self, name=None):
698 cmd = "delete from dem.names where id = %(name)s and id_identity = %(pat)s" 699 args = {'name': name['pk_name'], 'pat': self.ID} 700 gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
701 # can't have been the active name as that would raise an 702 # exception (since no active name would be left) so no 703 # data refetch needed 704 705 #--------------------------------------------------------
706 - def set_nickname(self, nickname=None):
707 """ 708 Set the nickname. Setting the nickname only makes sense for the currently 709 active name. 710 @param nickname The preferred/nick/warrior name to set. 711 """ 712 if self._payload[self._idx['preferred']] == nickname: 713 return True 714 rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': "SELECT dem.set_nickname(%s, %s)", 'args': [self.ID, nickname]}]) 715 # setting nickname doesn't change dem.identity, so other fields 716 # of dem.v_active_persons do not get changed as a consequence of 717 # setting the nickname, hence locally setting nickname matches 718 # in-database reality 719 self._payload[self._idx['preferred']] = nickname 720 #self.refetch_payload() 721 return True
722 723 #--------------------------------------------------------
724 - def get_tags(self, order_by=None):
725 if order_by is None: 726 order_by = '' 727 else: 728 order_by = 'ORDER BY %s' % order_by 729 730 cmd = gmDemographicRecord._SQL_get_person_tags % ('pk_identity = %%(pat)s %s' % order_by) 731 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': {'pat': self.ID}}], get_col_idx = True) 732 733 return [ gmDemographicRecord.cPersonTag(row = {'data': r, 'idx': idx, 'pk_field': 'pk_identity_tag'}) for r in rows ]
734 735 tags = property(get_tags, lambda x:x) 736 737 #--------------------------------------------------------
738 - def add_tag(self, tag):
739 args = { 740 'tag': tag, 741 'identity': self.ID 742 } 743 744 # already exists ? 745 cmd = "SELECT pk FROM dem.identity_tag WHERE fk_tag = %(tag)s AND fk_identity = %(identity)s" 746 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False) 747 if len(rows) > 0: 748 return gmDemographicRecord.cPersonTag(aPK_obj = rows[0]['pk']) 749 750 # no, add 751 cmd = """ 752 INSERT INTO dem.identity_tag ( 753 fk_tag, 754 fk_identity 755 ) VALUES ( 756 %(tag)s, 757 %(identity)s 758 ) 759 RETURNING pk 760 """ 761 rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], return_data = True, get_col_idx = False) 762 return gmDemographicRecord.cPersonTag(aPK_obj = rows[0]['pk'])
763 764 #--------------------------------------------------------
765 - def remove_tag(self, tag):
766 cmd = "DELETE FROM dem.identity_tag WHERE pk = %(pk)s" 767 gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': {'pk': tag}}])
768 769 #-------------------------------------------------------- 770 # external ID API 771 # 772 # since external IDs are not treated as first class 773 # citizens (classes in their own right, that is), we 774 # handle them *entirely* within cPerson, also they 775 # only make sense with one single person (like names) 776 # and are not reused (like addresses), so they are 777 # truly added/deleted, not just linked/unlinked 778 #--------------------------------------------------------
779 - def add_external_id(self, type_name=None, value=None, issuer=None, comment=None, pk_type=None):
780 """Adds an external ID to the patient. 781 782 creates ID type if necessary 783 """ 784 # check for existing ID 785 if pk_type is not None: 786 cmd = """ 787 select * from dem.v_external_ids4identity where 788 pk_identity = %(pat)s and 789 pk_type = %(pk_type)s and 790 value = %(val)s""" 791 else: 792 # by type/value/issuer 793 if issuer is None: 794 cmd = """ 795 select * from dem.v_external_ids4identity where 796 pk_identity = %(pat)s and 797 name = %(name)s and 798 value = %(val)s""" 799 else: 800 cmd = """ 801 select * from dem.v_external_ids4identity where 802 pk_identity = %(pat)s and 803 name = %(name)s and 804 value = %(val)s and 805 issuer = %(issuer)s""" 806 args = { 807 'pat': self.ID, 808 'name': type_name, 809 'val': value, 810 'issuer': issuer, 811 'pk_type': pk_type 812 } 813 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}]) 814 815 # create new ID if not found 816 if len(rows) == 0: 817 818 args = { 819 'pat': self.ID, 820 'val': value, 821 'type_name': type_name, 822 'pk_type': pk_type, 823 'issuer': issuer, 824 'comment': comment 825 } 826 827 if pk_type is None: 828 cmd = """insert into dem.lnk_identity2ext_id (external_id, fk_origin, comment, id_identity) values ( 829 %(val)s, 830 (select dem.add_external_id_type(%(type_name)s, %(issuer)s)), 831 %(comment)s, 832 %(pat)s 833 )""" 834 else: 835 cmd = """insert into dem.lnk_identity2ext_id (external_id, fk_origin, comment, id_identity) values ( 836 %(val)s, 837 %(pk_type)s, 838 %(comment)s, 839 %(pat)s 840 )""" 841 842 rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}]) 843 844 # or update comment of existing ID 845 else: 846 row = rows[0] 847 if comment is not None: 848 # comment not already there ? 849 if gmTools.coalesce(row['comment'], '').find(comment.strip()) == -1: 850 comment = '%s%s' % (gmTools.coalesce(row['comment'], '', '%s // '), comment.strip) 851 cmd = "update dem.lnk_identity2ext_id set comment = %(comment)s where id=%(pk)s" 852 args = {'comment': comment, 'pk': row['pk_id']} 853 rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
854 855 #--------------------------------------------------------
856 - def update_external_id(self, pk_id=None, type=None, value=None, issuer=None, comment=None):
857 """Edits an existing external ID. 858 859 Creates ID type if necessary. 860 """ 861 cmd = """ 862 UPDATE dem.lnk_identity2ext_id SET 863 fk_origin = (SELECT dem.add_external_id_type(%(type)s, %(issuer)s)), 864 external_id = %(value)s, 865 comment = gm.nullify_empty_string(%(comment)s) 866 WHERE 867 id = %(pk)s 868 """ 869 args = {'pk': pk_id, 'value': value, 'type': type, 'issuer': issuer, 'comment': comment} 870 rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
871 872 #--------------------------------------------------------
873 - def get_external_ids(self, id_type=None, issuer=None):
874 where_parts = ['pk_identity = %(pat)s'] 875 args = {'pat': self.ID} 876 877 if id_type is not None: 878 where_parts.append('name = %(name)s') 879 args['name'] = id_type.strip() 880 881 if issuer is not None: 882 where_parts.append('issuer = %(issuer)s') 883 args['issuer'] = issuer.strip() 884 885 cmd = "SELECT * FROM dem.v_external_ids4identity WHERE %s" % ' AND '.join(where_parts) 886 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}]) 887 888 return rows
889 890 external_ids = property(get_external_ids, lambda x:x) 891 892 #--------------------------------------------------------
893 - def delete_external_id(self, pk_ext_id=None):
894 cmd = """ 895 DELETE FROM dem.lnk_identity2ext_id 896 WHERE id_identity = %(pat)s AND id = %(pk)s""" 897 args = {'pat': self.ID, 'pk': pk_ext_id} 898 gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
899 900 #--------------------------------------------------------
901 - def suggest_external_id(self, target=None, encoding=None):
902 name = self.active_name 903 last = ' '.join(p for p in name['lastnames'].split("-")) 904 last = ' '.join(p for p in last.split(".")) 905 last = ' '.join(p for p in last.split("'")) 906 last = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in last.split(' ')) 907 first = ' '.join(p for p in name['firstnames'].split("-")) 908 first = ' '.join(p for p in first.split(".")) 909 first = ' '.join(p for p in first.split("'")) 910 first = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in first.split(' ')) 911 suggestion = 'GMd-%s%s%s%s%s' % ( 912 gmTools.coalesce(target, '', '%s-'), 913 last, 914 first, 915 self.get_formatted_dob(format = '-%Y%m%d', none_string = ''), 916 gmTools.coalesce(self['gender'], '', '-%s') 917 ) 918 try: 919 import unidecode 920 return unidecode.unidecode(suggestion) 921 except ImportError: 922 _log.debug('cannot transliterate external ID suggestion, <unidecode> module not installed') 923 if encoding is None: 924 return suggestion 925 return suggestion.encode(encoding)
926 927 external_id_suggestion = property(suggest_external_id, lambda x:x) 928 929 #--------------------------------------------------------
930 - def suggest_external_ids(self, target=None, encoding=None):
931 names2use = [self.active_name] 932 names2use.extend(self.get_names(active_only = False, exclude_active = True)) 933 target = gmTools.coalesce(target, '', '%s-') 934 dob = self.get_formatted_dob(format = '-%Y%m%d', none_string = '') 935 gender = gmTools.coalesce(self['gender'], '', '-%s') 936 suggestions = [] 937 for name in names2use: 938 last = ' '.join(p for p in name['lastnames'].split("-")) 939 last = ' '.join(p for p in last.split(".")) 940 last = ' '.join(p for p in last.split("'")) 941 last = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in last.split(' ')) 942 first = ' '.join(p for p in name['firstnames'].split("-")) 943 first = ' '.join(p for p in first.split(".")) 944 first = ' '.join(p for p in first.split("'")) 945 first = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in first.split(' ')) 946 suggestion = 'GMd-%s%s%s%s%s' % (target, last, first, dob, gender) 947 try: 948 import unidecode 949 suggestions.append(unidecode.unidecode(suggestion)) 950 continue 951 except ImportError: 952 _log.debug('cannot transliterate external ID suggestion, <unidecode> module not installed') 953 if encoding is None: 954 suggestions.append(suggestion) 955 else: 956 suggestions.append(suggestion.encode(encoding)) 957 return suggestions
958 959 #-------------------------------------------------------- 960 #--------------------------------------------------------
961 - def assimilate_identity(self, other_identity=None, link_obj=None):
962 """Merge another identity into this one. 963 964 Keep this one. Delete other one.""" 965 966 if other_identity.ID == self.ID: 967 return True, None 968 969 curr_pat = gmCurrentPatient() 970 if curr_pat.connected: 971 if other_identity.ID == curr_pat.ID: 972 return False, _('Cannot merge active patient into another patient.') 973 974 now_here = gmDateTime.pydt_strftime(gmDateTime.pydt_now_here()) 975 distinguisher = _('merge of #%s into #%s @ %s') % (other_identity.ID, self.ID, now_here) 976 977 queries = [] 978 args = {'pat2del': other_identity.ID, 'pat2keep': self.ID} 979 980 # merge allergy state 981 queries.append ({ 982 'cmd': """ 983 UPDATE clin.allergy_state SET 984 has_allergy = greatest ( 985 (SELECT has_allergy FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s), 986 (SELECT has_allergy FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s) 987 ), 988 -- perhaps use least() to play it safe and make it appear longer ago than it might have been, actually ? 989 last_confirmed = greatest ( 990 (SELECT last_confirmed FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s), 991 (SELECT last_confirmed FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s) 992 ) 993 WHERE 994 pk = (SELECT pk_allergy_state FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s) 995 """, 996 'args': args 997 }) 998 # delete old allergy state 999 queries.append ({ 1000 'cmd': 'DELETE FROM clin.allergy_state WHERE pk = (SELECT pk_allergy_state FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s)', 1001 'args': args 1002 }) 1003 1004 # merge patient proxy 1005 queries.append ({ 1006 'cmd': """ 1007 UPDATE clin.patient SET 1008 edc = coalesce ( 1009 edc, 1010 (SELECT edc FROM clin.patient WHERE fk_identity = %(pat2del)s) 1011 ) 1012 WHERE 1013 fk_identity = %(pat2keep)s 1014 """, 1015 'args': args 1016 }) 1017 1018 # transfer names 1019 # 1) hard-disambiguate all inactive names in old patient 1020 # (the active one will be disambiguated upon being moved) 1021 queries.append ({ 1022 'cmd': """ 1023 UPDATE dem.names d_n1 SET 1024 comment = coalesce ( 1025 comment, '' 1026 ) || coalesce ( 1027 ' (from identity: "' || (SELECT comment FROM dem.identity WHERE pk = %%(pat2del)s) || '")', 1028 '' 1029 ) || ' (during: "%s")' 1030 WHERE 1031 d_n1.id_identity = %%(pat2del)s 1032 """ % distinguisher, 1033 'args': args 1034 }) 1035 # 2) move inactive ones (dupes are expected to have been eliminated in step 1 above) 1036 queries.append ({ 1037 'cmd': u""" 1038 UPDATE dem.names d_n SET 1039 id_identity = %(pat2keep)s, 1040 lastnames = lastnames || ' [' || random()::TEXT || ']' 1041 WHERE 1042 d_n.id_identity = %(pat2del)s 1043 AND 1044 d_n.active IS false 1045 """, 1046 'args': args 1047 }) 1048 # 3) copy active name into pat2keep as an inactive name, 1049 # because each identity MUST have at LEAST one name, 1050 # we can't simply UPDATE over to pat2keep 1051 # also, needs de-duplication or else it would conflict with 1052 # *itself* on pat2keep 1053 queries.append ({ 1054 'cmd': """ 1055 INSERT INTO dem.names ( 1056 id_identity, active, firstnames, preferred, comment, 1057 lastnames 1058 ) 1059 SELECT 1060 %(pat2keep)s, false, firstnames, preferred, comment, 1061 lastnames || ' [' || random()::text || ']' 1062 FROM dem.names d_n 1063 WHERE 1064 d_n.id_identity = %(pat2del)s 1065 AND 1066 d_n.active IS true 1067 """, 1068 'args': args 1069 }) 1070 1071 # disambiguate potential dupes 1072 # - same-url comm channels 1073 queries.append ({ 1074 'cmd': """ 1075 UPDATE dem.lnk_identity2comm 1076 SET url = url || ' (%s)' 1077 WHERE 1078 fk_identity = %%(pat2del)s 1079 AND 1080 EXISTS ( 1081 SELECT 1 FROM dem.lnk_identity2comm d_li2c 1082 WHERE d_li2c.fk_identity = %%(pat2keep)s AND d_li2c.url = url 1083 ) 1084 """ % distinguisher, 1085 'args': args 1086 }) 1087 # - same-value external IDs 1088 queries.append ({ 1089 'cmd': """ 1090 UPDATE dem.lnk_identity2ext_id 1091 SET external_id = external_id || ' (%s)' 1092 WHERE 1093 id_identity = %%(pat2del)s 1094 AND 1095 EXISTS ( 1096 SELECT 1 FROM dem.lnk_identity2ext_id d_li2e 1097 WHERE 1098 d_li2e.id_identity = %%(pat2keep)s 1099 AND 1100 d_li2e.external_id = external_id 1101 AND 1102 d_li2e.fk_origin = fk_origin 1103 ) 1104 """ % distinguisher, 1105 'args': args 1106 }) 1107 # - same addresses 1108 queries.append ({ 1109 'cmd': """ 1110 DELETE FROM dem.lnk_person_org_address 1111 WHERE 1112 id_identity = %(pat2del)s 1113 AND 1114 id_address IN ( 1115 SELECT id_address FROM dem.lnk_person_org_address d_lpoa 1116 WHERE d_lpoa.id_identity = %(pat2keep)s 1117 ) 1118 """, 1119 'args': args 1120 }) 1121 1122 # find FKs pointing to dem.identity.pk 1123 FKs = gmPG2.get_foreign_keys2column ( 1124 schema = 'dem', 1125 table = 'identity', 1126 column = 'pk' 1127 ) 1128 # find FKs pointing to clin.patient.fk_identity 1129 FKs.extend (gmPG2.get_foreign_keys2column ( 1130 schema = 'clin', 1131 table = 'patient', 1132 column = 'fk_identity' 1133 )) 1134 1135 # generate UPDATEs 1136 cmd_template = 'UPDATE %s SET %s = %%(pat2keep)s WHERE %s = %%(pat2del)s' 1137 for FK in FKs: 1138 if FK['referencing_table'] in ['dem.names', 'clin.patient']: 1139 continue 1140 queries.append ({ 1141 'cmd': cmd_template % (FK['referencing_table'], FK['referencing_column'], FK['referencing_column']), 1142 'args': args 1143 }) 1144 1145 # delete old patient proxy 1146 queries.append ({ 1147 'cmd': 'DELETE FROM clin.patient WHERE fk_identity = %(pat2del)s', 1148 'args': args 1149 }) 1150 1151 # remove old identity entry 1152 queries.append ({ 1153 'cmd': 'delete from dem.identity where pk = %(pat2del)s', 1154 'args': args 1155 }) 1156 1157 script_name = gmTools.get_unique_filename(prefix = 'gm-assimilate-%(pat2del)s-into-%(pat2keep)s-' % args, suffix = '.sql') 1158 _log.warning('identity [%s] is about to assimilate identity [%s], SQL script [%s]', self.ID, other_identity.ID, script_name) 1159 1160 script = io.open(script_name, 'wt') 1161 args['date'] = gmDateTime.pydt_strftime(gmDateTime.pydt_now_here(), '%Y %B %d %H:%M') 1162 script.write(_MERGE_SCRIPT_HEADER % args) 1163 for query in queries: 1164 script.write(query['cmd'] % args) 1165 script.write(';\n') 1166 script.write('\nROLLBACK;\n') 1167 script.write('--COMMIT;\n') 1168 script.close() 1169 1170 try: 1171 gmPG2.run_rw_queries(link_obj = link_obj, queries = queries, end_tx = True) 1172 except Exception: 1173 return False, _('The merge failed. Check the log and [%s]') % script_name 1174 1175 self.add_external_id ( 1176 type_name = 'merged GNUmed identity primary key', 1177 value = 'GNUmed::pk::%s' % other_identity.ID, 1178 issuer = 'GNUmed' 1179 ) 1180 1181 return True, None
1182 1183 #-------------------------------------------------------- 1184 #--------------------------------------------------------
1185 - def put_on_waiting_list(self, urgency=0, comment=None, zone=None):
1186 cmd = """ 1187 insert into clin.waiting_list (fk_patient, urgency, comment, area, list_position) 1188 values ( 1189 %(pat)s, 1190 %(urg)s, 1191 %(cmt)s, 1192 %(area)s, 1193 (select coalesce((max(list_position) + 1), 1) from clin.waiting_list) 1194 )""" 1195 args = {'pat': self.ID, 'urg': urgency, 'cmt': comment, 'area': zone} 1196 gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], verbose = True) 1197 gmHooks.run_hook_script(hook = 'after_waiting_list_modified')
1198 1199 #--------------------------------------------------------
1200 - def get_waiting_list_entry(self):
1201 cmd = """SELECT * FROM clin.v_waiting_list WHERE pk_identity = %(pat)s""" 1202 args = {'pat': self.ID} 1203 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}]) 1204 return rows
1205 1206 waiting_list_entries = property(get_waiting_list_entry, lambda x:x) 1207 1208 #--------------------------------------------------------
1209 - def _get_export_area(self):
1210 return gmExportArea.cExportArea(self.ID)
1211 1212 export_area = property(_get_export_area, lambda x:x) 1213 #--------------------------------------------------------
1214 - def export_as_gdt(self, filename=None, encoding='iso-8859-15', external_id_type=None):
1215 1216 template = '%s%s%s\r\n' 1217 1218 if filename is None: 1219 filename = gmTools.get_unique_filename ( 1220 prefix = 'gm-patient-', 1221 suffix = '.gdt' 1222 ) 1223 1224 gdt_file = io.open(filename, mode = 'wt', encoding = encoding, errors = 'strict') 1225 1226 gdt_file.write(template % ('013', '8000', '6301')) 1227 gdt_file.write(template % ('013', '9218', '2.10')) 1228 if external_id_type is None: 1229 gdt_file.write(template % ('%03d' % (9 + len(str(self.ID))), '3000', self.ID)) 1230 else: 1231 ext_ids = self.get_external_ids(id_type = external_id_type) 1232 if len(ext_ids) > 0: 1233 gdt_file.write(template % ('%03d' % (9 + len(ext_ids[0]['value'])), '3000', ext_ids[0]['value'])) 1234 gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['lastnames']])), '3101', self._payload[self._idx['lastnames']])) 1235 gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['firstnames']])), '3102', self._payload[self._idx['firstnames']])) 1236 gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['dob']].strftime('%d%m%Y'))), '3103', self._payload[self._idx['dob']].strftime('%d%m%Y'))) 1237 gdt_file.write(template % ('010', '3110', gmXdtMappings.map_gender_gm2xdt[self._payload[self._idx['gender']]])) 1238 gdt_file.write(template % ('025', '6330', 'GNUmed::9206::encoding')) 1239 gdt_file.write(template % ('%03d' % (9 + len(encoding)), '6331', encoding)) 1240 if external_id_type is None: 1241 gdt_file.write(template % ('029', '6332', 'GNUmed::3000::source')) 1242 gdt_file.write(template % ('017', '6333', 'internal')) 1243 else: 1244 if len(ext_ids) > 0: 1245 gdt_file.write(template % ('029', '6332', 'GNUmed::3000::source')) 1246 gdt_file.write(template % ('%03d' % (9 + len(external_id_type)), '6333', external_id_type)) 1247 1248 gdt_file.close() 1249 1250 return filename
1251 #--------------------------------------------------------
1252 - def export_as_xml_linuxmednews(self, filename=None):
1253 1254 if filename is None: 1255 filename = gmTools.get_unique_filename ( 1256 prefix = 'gm-LinuxMedNews_demographics-', 1257 suffix = '.xml' 1258 ) 1259 1260 dob_format = '%Y-%m-%d' 1261 pat = etree.Element('patient') 1262 1263 first = etree.SubElement(pat, 'firstname') 1264 first.text = gmTools.coalesce(self._payload[self._idx['firstnames']], '') 1265 1266 last = etree.SubElement(pat, 'lastname') 1267 last.text = gmTools.coalesce(self._payload[self._idx['lastnames']], '') 1268 1269 # privacy 1270 #middle = etree.SubElement(pat, u'middlename') 1271 #middle.set(u'comment', _('preferred name/call name/...')) 1272 #middle.text = gmTools.coalesce(self._payload[self._idx['preferred']], u'') 1273 1274 pref = etree.SubElement(pat, 'name_prefix') 1275 pref.text = gmTools.coalesce(self._payload[self._idx['title']], '') 1276 1277 suff = etree.SubElement(pat, 'name_suffix') 1278 suff.text = '' 1279 1280 dob = etree.SubElement(pat, 'DOB') 1281 dob.set('format', dob_format) 1282 dob.text = gmDateTime.pydt_strftime(self._payload[self._idx['dob']], dob_format, accuracy = gmDateTime.acc_days, none_str = '') 1283 1284 gender = etree.SubElement(pat, 'gender') 1285 gender.set('comment', self.gender_string) 1286 if self._payload[self._idx['gender']] is None: 1287 gender.text = '' 1288 else: 1289 gender.text = map_gender2mf[self._payload[self._idx['gender']]] 1290 1291 home = etree.SubElement(pat, 'home_address') 1292 adrs = self.get_addresses(address_type = 'home') 1293 if len(adrs) > 0: 1294 adr = adrs[0] 1295 city = etree.SubElement(home, 'city') 1296 city.set('comment', gmTools.coalesce(adr['suburb'], '')) 1297 city.text = gmTools.coalesce(adr['urb'], '') 1298 1299 region = etree.SubElement(home, 'region') 1300 region.set('comment', gmTools.coalesce(adr['l10n_region'], '')) 1301 region.text = gmTools.coalesce(adr['code_region'], '') 1302 1303 zipcode = etree.SubElement(home, 'postal_code') 1304 zipcode.text = gmTools.coalesce(adr['postcode'], '') 1305 1306 street = etree.SubElement(home, 'street') 1307 street.set('comment', gmTools.coalesce(adr['notes_street'], '')) 1308 street.text = gmTools.coalesce(adr['street'], '') 1309 1310 no = etree.SubElement(home, 'number') 1311 no.set('subunit', gmTools.coalesce(adr['subunit'], '')) 1312 no.set('comment', gmTools.coalesce(adr['notes_subunit'], '')) 1313 no.text = gmTools.coalesce(adr['number'], '') 1314 1315 country = etree.SubElement(home, 'country') 1316 country.set('comment', adr['l10n_country']) 1317 country.text = gmTools.coalesce(adr['code_country'], '') 1318 1319 phone = etree.SubElement(pat, 'home_phone') 1320 rec = self.get_comm_channels(comm_medium = 'homephone') 1321 if len(rec) > 0: 1322 if not rec[0]['is_confidential']: 1323 phone.set('comment', gmTools.coalesce(rec[0]['comment'], '')) 1324 phone.text = rec[0]['url'] 1325 1326 phone = etree.SubElement(pat, 'work_phone') 1327 rec = self.get_comm_channels(comm_medium = 'workphone') 1328 if len(rec) > 0: 1329 if not rec[0]['is_confidential']: 1330 phone.set('comment', gmTools.coalesce(rec[0]['comment'], '')) 1331 phone.text = rec[0]['url'] 1332 1333 phone = etree.SubElement(pat, 'cell_phone') 1334 rec = self.get_comm_channels(comm_medium = 'mobile') 1335 if len(rec) > 0: 1336 if not rec[0]['is_confidential']: 1337 phone.set('comment', gmTools.coalesce(rec[0]['comment'], '')) 1338 phone.text = rec[0]['url'] 1339 1340 tree = etree.ElementTree(pat) 1341 tree.write(filename, encoding = 'UTF-8') 1342 1343 return filename
1344 1345 #--------------------------------------------------------
1346 - def export_as_vcard(self, filename=None):
1347 # http://vobject.skyhouseconsulting.com/usage.html 1348 # http://en.wikipedia.org/wiki/VCard 1349 # http://svn.osafoundation.org/vobject/trunk/vobject/vcard.py 1350 # http://www.ietf.org/rfc/rfc2426.txt 1351 1352 dob_format = '%Y%m%d' 1353 1354 import vobject 1355 1356 vc = vobject.vCard() 1357 vc.add('kind') 1358 vc.kind.value = 'individual' 1359 1360 vc.add('fn') 1361 vc.fn.value = self.get_description(with_nickname = False) # privacy 1362 vc.add('n') 1363 vc.n.value = vobject.vcard.Name(family = self._payload[self._idx['lastnames']], given = self._payload[self._idx['firstnames']]) 1364 # privacy 1365 #vc.add(u'nickname') 1366 #vc.nickname.value = gmTools.coalesce(self._payload[self._idx['preferred']], u'') 1367 vc.add('title') 1368 vc.title.value = gmTools.coalesce(self._payload[self._idx['title']], '') 1369 vc.add('gender') 1370 # FIXME: dont know how to add gender_string after ';' 1371 vc.gender.value = map_gender2vcard[self._payload[self._idx['gender']]]#, self.gender_string 1372 vc.add('bday') 1373 vc.bday.value = gmDateTime.pydt_strftime(self._payload[self._idx['dob']], dob_format, accuracy = gmDateTime.acc_days, none_str = '') 1374 1375 channels = self.get_comm_channels(comm_medium = 'homephone') 1376 if len(channels) > 0: 1377 if not channels[0]['is_confidential']: 1378 vc.add('tel') 1379 vc.tel.value = channels[0]['url'] 1380 vc.tel.type_param = 'HOME' 1381 channels = self.get_comm_channels(comm_medium = 'workphone') 1382 if len(channels) > 0: 1383 if not channels[0]['is_confidential']: 1384 vc.add('tel') 1385 vc.tel.value = channels[0]['url'] 1386 vc.tel.type_param = 'WORK' 1387 channels = self.get_comm_channels(comm_medium = 'mobile') 1388 if len(channels) > 0: 1389 if not channels[0]['is_confidential']: 1390 vc.add('tel') 1391 vc.tel.value = channels[0]['url'] 1392 vc.tel.type_param = 'CELL' 1393 channels = self.get_comm_channels(comm_medium = 'fax') 1394 if len(channels) > 0: 1395 if not channels[0]['is_confidential']: 1396 vc.add('tel') 1397 vc.tel.value = channels[0]['url'] 1398 vc.tel.type_param = 'FAX' 1399 channels = self.get_comm_channels(comm_medium = 'email') 1400 if len(channels) > 0: 1401 if not channels[0]['is_confidential']: 1402 vc.add('email') 1403 vc.tel.value = channels[0]['url'] 1404 vc.tel.type_param = 'INTERNET' 1405 channels = self.get_comm_channels(comm_medium = 'web') 1406 if len(channels) > 0: 1407 if not channels[0]['is_confidential']: 1408 vc.add('url') 1409 vc.tel.value = channels[0]['url'] 1410 vc.tel.type_param = 'INTERNET' 1411 1412 adrs = self.get_addresses(address_type = 'home') 1413 if len(adrs) > 0: 1414 home_adr = adrs[0] 1415 vc.add('adr') 1416 vc.adr.type_param = 'HOME' 1417 vc.adr.value = vobject.vcard.Address() 1418 vc_adr = vc.adr.value 1419 vc_adr.extended = gmTools.coalesce(home_adr['subunit'], '') 1420 vc_adr.street = gmTools.coalesce(home_adr['street'], '', '%s ') + gmTools.coalesce(home_adr['number'], '') 1421 vc_adr.region = gmTools.coalesce(home_adr['l10n_region'], '') 1422 vc_adr.code = gmTools.coalesce(home_adr['postcode'], '') 1423 vc_adr.city = gmTools.coalesce(home_adr['urb'], '') 1424 vc_adr.country = gmTools.coalesce(home_adr['l10n_country'], '') 1425 1426 #photo (base64) 1427 1428 if filename is None: 1429 filename = gmTools.get_unique_filename ( 1430 prefix = 'gm-patient-', 1431 suffix = '.vcf' 1432 ) 1433 vcf = io.open(filename, mode = 'wt', encoding = 'utf8') 1434 try: 1435 vcf.write(vc.serialize()) 1436 except UnicodeDecodeError: 1437 _log.exception('failed to serialize VCF data') 1438 vcf.close() 1439 return 'cannot-serialize.vcf' 1440 vcf.close() 1441 1442 return filename
1443 1444 #--------------------------------------------------------
1445 - def export_as_mecard(self, filename=None):
1446 if filename is None: 1447 filename = gmTools.get_unique_filename ( 1448 prefix = 'gm-patient-', 1449 suffix = '.mcf' 1450 ) 1451 with io.open(filename, mode = 'wt', encoding = 'utf8') as mecard_file: 1452 mecard_file.write(self.MECARD) 1453 return filename
1454 1455 #--------------------------------------------------------
1456 - def _get_mecard(self):
1457 """ 1458 http://blog.thenetimpact.com/2011/07/decoding-qr-codes-how-to-format-data-for-qr-code-generators/ 1459 https://www.nttdocomo.co.jp/english/service/developer/make/content/barcode/function/application/addressbook/index.html 1460 1461 MECARD:N:NAME;ADR:pobox,subunit,unit,street,ort,region,zip,country;TEL:111111111;FAX:22222222;EMAIL:mail@praxis.org; 1462 1463 1464 MECARD:N:lastname,firstname;BDAY:YYYYMMDD;ADR:pobox,subunit,number,street,location,region,zip,country;; 1465 MECARD:N:$<lastname::::>$,$<firstname::::>$;BDAY:$<date_of_birth::%Y%m%d::>$;ADR:,$<adr_subunit::home::>$,$<adr_number::home::>$,$<adr_street::home::>$,$<adr_location::home::>$,,$<adr_postcode::home::>$,$<adr_country::home::>$;; 1466 """ 1467 MECARD = 'MECARD:N:%s,%s;' % ( 1468 self._payload[self._idx['lastnames']], 1469 self._payload[self._idx['firstnames']] 1470 ) 1471 if self._payload[self._idx['dob']] is not None: 1472 MECARD += 'BDAY:%s;' % gmDateTime.pydt_strftime ( 1473 self._payload[self._idx['dob']], 1474 '%Y%m%d', 1475 accuracy = gmDateTime.acc_days, 1476 none_str = '' 1477 ) 1478 adrs = self.get_addresses(address_type = 'home') 1479 if len(adrs) > 0: 1480 MECARD += 'ADR:,%(subunit)s,%(number)s,%(street)s,%(urb)s,,%(postcode)s,%(l10n_country)s;' % adrs[0] 1481 comms = self.get_comm_channels(comm_medium = 'homephone') 1482 if len(comms) > 0: 1483 if not comms[0]['is_confidential']: 1484 MECARD += 'TEL:%s;' % comms[0]['url'] 1485 comms = self.get_comm_channels(comm_medium = 'fax') 1486 if len(comms) > 0: 1487 if not comms[0]['is_confidential']: 1488 MECARD += 'FAX:%s;' % comms[0]['url'] 1489 comms = self.get_comm_channels(comm_medium = 'email') 1490 if len(comms) > 0: 1491 if not comms[0]['is_confidential']: 1492 MECARD += 'EMAIL:%s;' % comms[0]['url'] 1493 return MECARD
1494 1495 MECARD = property(_get_mecard) 1496 1497 #-------------------------------------------------------- 1498 # occupations API 1499 #--------------------------------------------------------
1500 - def get_occupations(self):
1501 return gmDemographicRecord.get_occupations(pk_identity = self.pk_obj)
1502 1503 #-------------------------------------------------------- 1540 #-------------------------------------------------------- 1548 #-------------------------------------------------------- 1549 # comms API 1550 #--------------------------------------------------------
1551 - def get_comm_channels(self, comm_medium=None):
1552 cmd = "select * from dem.v_person_comms where pk_identity = %s" 1553 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': [self.pk_obj]}], get_col_idx = True) 1554 1555 filtered = rows 1556 1557 if comm_medium is not None: 1558 filtered = [] 1559 for row in rows: 1560 if row['comm_type'] == comm_medium: 1561 filtered.append(row) 1562 1563 return [ gmDemographicRecord.cCommChannel(row = { 1564 'pk_field': 'pk_lnk_identity2comm', 1565 'data': r, 1566 'idx': idx 1567 }) for r in filtered 1568 ]
1569 1570 comm_channels = property(get_comm_channels, lambda x:x) 1571 #-------------------------------------------------------- 1589 #-------------------------------------------------------- 1595 #-------------------------------------------------------- 1596 # contacts API 1597 #--------------------------------------------------------
1598 - def get_addresses(self, address_type=None):
1599 cmd = "SELECT pk_address FROM dem.v_pat_addresses WHERE pk_identity = %(pat)s" 1600 args = {'pat': self.pk_obj} 1601 if address_type is not None: 1602 cmd = cmd + " AND address_type = %(typ)s" 1603 args['typ'] = address_type 1604 1605 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True) 1606 return [ 1607 gmDemographicRecord.cPatientAddress(aPK_obj = { 1608 'pk_adr': r['pk_address'], 1609 'pk_pat': self.pk_obj 1610 }) for r in rows 1611 ]
1612 1613 #-------------------------------------------------------- 1658 1659 #---------------------------------------------------------------------- 1680 #---------------------------------------------------------------------- 1681 # bills API 1682 #----------------------------------------------------------------------
1683 - def get_bills(self, order_by=None, pk_patient=None):
1684 return gmBilling.get_bills ( 1685 order_by = order_by, 1686 pk_patient = self.pk_obj 1687 )
1688 1689 bills = property(get_bills, lambda x:x) 1690 #---------------------------------------------------------------------- 1691 # relatives API 1692 #----------------------------------------------------------------------
1693 - def get_relatives(self):
1694 cmd = """ 1695 SELECT 1696 d_rt.description, 1697 d_vap.* 1698 FROM 1699 dem.v_all_persons d_vap, 1700 dem.relation_types d_rt, 1701 dem.lnk_person2relative d_lp2r 1702 WHERE 1703 ( d_lp2r.id_identity = %(pk)s 1704 AND 1705 d_vap.pk_identity = d_lp2r.id_relative 1706 AND 1707 d_rt.id = d_lp2r.id_relation_type 1708 ) or ( 1709 d_lp2r.id_relative = %(pk)s 1710 AND 1711 d_vap.pk_identity = d_lp2r.id_identity 1712 AND 1713 d_rt.inverse = d_lp2r.id_relation_type 1714 )""" 1715 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': {'pk': self.pk_obj}}]) 1716 if len(rows) == 0: 1717 return [] 1718 return [(row[0], cPerson(row = {'data': row[1:], 'idx':idx, 'pk_field': 'pk_identity'})) for row in rows]
1719 #-------------------------------------------------------- 1739 #----------------------------------------------------------------------
1740 - def delete_relative(self, relation):
1741 # unlink only, don't delete relative itself 1742 self.set_relative(None, relation)
1743 #--------------------------------------------------------
1745 if self._payload[self._idx['pk_emergency_contact']] is None: 1746 return None 1747 return cPerson(self._payload[self._idx['pk_emergency_contact']])
1748 1749 emergency_contact_in_database = property(_get_emergency_contact_from_database, lambda x:x) 1750 1751 #---------------------------------------------------------------------- 1752 # age/dob related 1753 #----------------------------------------------------------------------
1754 - def get_formatted_dob(self, format='%Y %b %d', none_string=None, honor_estimation=False):
1755 return gmDateTime.format_dob ( 1756 self._payload[self._idx['dob']], 1757 format = format, 1758 none_string = none_string, 1759 dob_is_estimated = self._payload[self._idx['dob_is_estimated']] and honor_estimation 1760 )
1761 1762 #----------------------------------------------------------------------
1763 - def get_medical_age(self):
1764 dob = self['dob'] 1765 1766 if dob is None: 1767 return '??' 1768 1769 if dob > gmDateTime.pydt_now_here(): 1770 return _('invalid age: DOB in the future') 1771 1772 death = self['deceased'] 1773 1774 if death is None: 1775 return '%s%s' % ( 1776 gmTools.bool2subst ( 1777 self._payload[self._idx['dob_is_estimated']], 1778 gmTools.u_almost_equal_to, 1779 '' 1780 ), 1781 gmDateTime.format_apparent_age_medically ( 1782 age = gmDateTime.calculate_apparent_age(start = dob) 1783 ) 1784 ) 1785 1786 if dob > death: 1787 return _('invalid age: DOB after death') 1788 1789 return '%s%s%s' % ( 1790 gmTools.u_latin_cross, 1791 gmTools.bool2subst ( 1792 self._payload[self._idx['dob_is_estimated']], 1793 gmTools.u_almost_equal_to, 1794 '' 1795 ), 1796 gmDateTime.format_apparent_age_medically ( 1797 age = gmDateTime.calculate_apparent_age ( 1798 start = dob, 1799 end = self['deceased'] 1800 ) 1801 ) 1802 )
1803 1804 #----------------------------------------------------------------------
1805 - def dob_in_range(self, min_distance='1 week', max_distance='1 week'):
1806 if self['dob'] is None: 1807 return False 1808 cmd = 'select dem.dob_is_in_range(%(dob)s, %(min)s, %(max)s)' 1809 rows, idx = gmPG2.run_ro_queries ( 1810 queries = [{ 1811 'cmd': cmd, 1812 'args': {'dob': self['dob'], 'min': min_distance, 'max': max_distance} 1813 }] 1814 ) 1815 return rows[0][0]
1816 1817 #----------------------------------------------------------------------
1819 if self['dob'] is None: 1820 return None 1821 now = gmDateTime.pydt_now_here() 1822 if now.month < self['dob'].month: 1823 return False 1824 if now.month > self['dob'].month: 1825 return True 1826 # -> DOB is this month 1827 if now.day < self['dob'].day: 1828 return False 1829 if now.day > self['dob'].day: 1830 return True 1831 # -> DOB is today 1832 return False
1833 1834 current_birthday_passed = property(_get_current_birthday_passed) 1835 1836 #----------------------------------------------------------------------
1837 - def _get_birthday_this_year(self):
1838 if self['dob'] is None: 1839 return None 1840 now = gmDateTime.pydt_now_here() 1841 return gmDateTime.pydt_replace ( 1842 dt = self['dob'], 1843 year = now.year, 1844 strict = False 1845 )
1846 1847 birthday_this_year = property(_get_birthday_this_year) 1848 1849 #----------------------------------------------------------------------
1850 - def _get_birthday_next_year(self):
1851 if self['dob'] is None: 1852 return None 1853 now = gmDateTime.pydt_now_here() 1854 return gmDateTime.pydt_replace ( 1855 dt = self['dob'], 1856 year = now.year + 1, 1857 strict = False 1858 )
1859 1860 birthday_next_year = property(_get_birthday_next_year) 1861 1862 #----------------------------------------------------------------------
1863 - def _get_birthday_last_year(self):
1864 if self['dob'] is None: 1865 return None 1866 now = gmDateTime.pydt_now_here() 1867 return gmDateTime.pydt_replace ( 1868 dt = self['dob'], 1869 year = now.year - 1, 1870 strict = False 1871 )
1872 1873 birthday_last_year = property(_get_birthday_last_year, lambda x:x) 1874 1875 #---------------------------------------------------------------------- 1876 # practice related 1877 #----------------------------------------------------------------------
1878 - def get_last_encounter(self):
1879 cmd = 'select * from clin.v_most_recent_encounters where pk_patient=%s' 1880 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': [self._payload[self._idx['pk_identity']]]}]) 1881 if len(rows) > 0: 1882 return rows[0] 1883 else: 1884 return None
1885 #--------------------------------------------------------
1886 - def get_messages(self, order_by=None):
1887 return gmProviderInbox.get_inbox_messages(pk_patient = self._payload[self._idx['pk_identity']], order_by = order_by)
1888 1889 messages = property(get_messages, lambda x:x) 1890 #--------------------------------------------------------
1891 - def _get_overdue_messages(self):
1892 return gmProviderInbox.get_overdue_messages(pk_patient = self._payload[self._idx['pk_identity']])
1893 1894 overdue_messages = property(_get_overdue_messages, lambda x:x) 1895 1896 #--------------------------------------------------------
1897 - def delete_message(self, pk=None):
1898 return gmProviderInbox.delete_inbox_message(inbox_message = pk)
1899 1900 #--------------------------------------------------------
1901 - def _get_dynamic_hints(self, pk_encounter=None):
1902 return gmAutoHints.get_hints_for_patient ( 1903 pk_identity = self._payload[self._idx['pk_identity']], 1904 pk_encounter = pk_encounter 1905 )
1906 1907 dynamic_hints = property(_get_dynamic_hints, lambda x:x) 1908 1909 #--------------------------------------------------------
1910 - def _get_suppressed_hints(self):
1911 return gmAutoHints.get_suppressed_hints(pk_identity = self._payload[self._idx['pk_identity']])
1912 1913 suppressed_hints = property(_get_suppressed_hints, lambda x:x) 1914 1915 #--------------------------------------------------------
1917 if self._payload[self._idx['pk_primary_provider']] is None: 1918 return None 1919 cmd = "SELECT * FROM dem.v_all_persons WHERE pk_identity = (SELECT pk_identity FROM dem.v_staff WHERE pk_staff = %(pk_staff)s)" 1920 args = {'pk_staff': self._payload[self._idx['pk_primary_provider']]} 1921 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True) 1922 if len(rows) == 0: 1923 return None 1924 return cPerson(row = {'data': rows[0], 'idx': idx, 'pk_field': 'pk_identity'})
1925 1926 primary_provider_identity = property(_get_primary_provider_identity, lambda x:x) 1927 1928 #--------------------------------------------------------
1929 - def _get_primary_provider(self):
1930 if self._payload[self._idx['pk_primary_provider']] is None: 1931 return None 1932 from Gnumed.business import gmStaff 1933 return gmStaff.cStaff(aPK_obj = self._payload[self._idx['pk_primary_provider']])
1934 1935 primary_provider = property(_get_primary_provider, lambda x:x) 1936 1937 #---------------------------------------------------------------------- 1938 # convenience 1939 #----------------------------------------------------------------------
1940 - def get_subdir_name(self):
1941 """Format patient demographics into patient specific path name fragment.""" 1942 1943 return gmTools.fname_sanitize('%s-%s-%s-ID_%s' % ( 1944 self._payload[self._idx['lastnames']], 1945 self._payload[self._idx['firstnames']], 1946 self.get_formatted_dob(format = '%Y-%m-%d'), 1947 self._payload[self._idx['pk_identity']] # make unique across "same" patients 1948 ))
1949 #).replace ( 1950 # u'\u2248', u'' # "approximately", having been added by dob_is_estimated 1951 #) 1952 1953 subdir_name = property(get_subdir_name, lambda x:x)
1954 1955 #============================================================
1956 -def identity_is_patient(pk_identity):
1957 cmd = 'SELECT 1 FROM clin.patient WHERE fk_identity = %(pk_pat)s' 1958 args = {'pk_pat': pk_identity} 1959 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False) 1960 if len(rows) == 0: 1961 return False 1962 return True
1963 1964 #------------------------------------------------------------
1965 -def turn_identity_into_patient(pk_identity):
1966 cmd = """ 1967 INSERT INTO clin.patient (fk_identity) 1968 SELECT %(pk_ident)s WHERE NOT EXISTS ( 1969 SELECT 1 FROM clin.patient c_p WHERE fk_identity = %(pk_ident)s 1970 )""" 1971 args = {'pk_ident': pk_identity} 1972 queries = [{'cmd': cmd, 'args': args}] 1973 gmPG2.run_rw_queries(queries = queries) 1974 return True
1975 1976 #============================================================ 1977 # helper functions 1978 #------------------------------------------------------------ 1979 _yield = lambda *x:None 1980
1981 -def set_yielder(yielder):
1982 if not callable(yielder): 1983 raise TypeError('yielder <%s> is not callable' % yielder) 1984 global _yield 1985 _yield = yielder 1986 _log.debug('setting yielder to <%s>', yielder)
1987 1988 #============================================================
1989 -class cPatient(cPerson):
1990 """Represents a person which is a patient. 1991 1992 - a specializing subclass of cPerson turning it into a patient 1993 - its use is to cache subobjects like EMR and document folder 1994 """
1995 - def __init__(self, aPK_obj=None, row=None):
1996 cPerson.__init__(self, aPK_obj = aPK_obj, row = row) 1997 self.__emr_access_lock = threading.Lock() 1998 self.__emr = None 1999 self.__doc_folder = None
2000 2001 #--------------------------------------------------------
2002 - def cleanup(self):
2003 """Do cleanups before dying. 2004 2005 - note that this may be called in a thread 2006 """ 2007 if self.__emr is not None: 2008 self.__emr.cleanup() 2009 if self.__doc_folder is not None: 2010 self.__doc_folder.cleanup() 2011 cPerson.cleanup(self)
2012 2013 #----------------------------------------------------------------
2014 - def ensure_has_allergy_state(self, pk_encounter=None):
2015 from Gnumed.business.gmAllergy import ensure_has_allergy_state 2016 ensure_has_allergy_state(encounter = pk_encounter) 2017 return True
2018 2019 #----------------------------------------------------------
2020 - def get_emr(self):
2021 _log.debug('accessing EMR for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident()) 2022 2023 # fast path: already set, just return it 2024 if self.__emr is not None: 2025 return self.__emr 2026 2027 stack_logged = False 2028 got_lock = self.__emr_access_lock.acquire(False) 2029 if not got_lock: 2030 # do some logging as we failed to get the lock 2031 call_stack = inspect.stack() 2032 call_stack.reverse() 2033 for idx in range(1, len(call_stack)): 2034 caller = call_stack[idx] 2035 _log.debug('%s[%s] @ [%s] in [%s]', ' '* idx, caller[3], caller[2], caller[1]) 2036 del call_stack 2037 stack_logged = True 2038 # now loop a bit 2039 for idx in range(500): 2040 _yield() 2041 time.sleep(0.1) 2042 _yield() 2043 got_lock = self.__emr_access_lock.acquire(False) 2044 if got_lock: 2045 break 2046 if not got_lock: 2047 _log.error('still failed to acquire EMR access lock, aborting (thread [%s])', threading.get_ident()) 2048 self.__emr_access_lock.release() 2049 raise AttributeError('cannot lock access to EMR for identity [%s]' % self._payload[self._idx['pk_identity']]) 2050 2051 _log.debug('pulling chart for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident()) 2052 if not stack_logged: 2053 # do some logging as we are pulling the chart for the first time 2054 call_stack = inspect.stack() 2055 call_stack.reverse() 2056 for idx in range(1, len(call_stack)): 2057 caller = call_stack[idx] 2058 _log.debug('%s[%s] @ [%s] in [%s]', ' '* idx, caller[3], caller[2], caller[1]) 2059 del call_stack 2060 stack_logged = True 2061 2062 self.is_patient = True 2063 from Gnumed.business import gmClinicalRecord 2064 emr = gmClinicalRecord.cClinicalRecord(aPKey = self._payload[self._idx['pk_identity']]) 2065 2066 _log.debug('returning EMR for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident()) 2067 self.__emr = emr 2068 self.__emr_access_lock.release() 2069 return self.__emr
2070 2071 emr = property(get_emr, lambda x:x) 2072 2073 #----------------------------------------------------------
2074 - def get_document_folder(self):
2075 if self.__doc_folder is None: 2076 self.__doc_folder = cDocumentFolder(aPKey = self._payload[self._idx['pk_identity']]) 2077 return self.__doc_folder
2078 2079 document_folder = property(get_document_folder, lambda x:x)
2080 2081 #============================================================
2082 -class gmCurrentPatient(gmBorg.cBorg):
2083 """Patient Borg to hold the currently active patient. 2084 2085 There may be many instances of this but they all share state. 2086 2087 The underlying dem.identity row must have .deleted set to FALSE. 2088 2089 The sequence of events when changing the active patient: 2090 2091 1) Registered callbacks are run. 2092 Those are run synchronously. If a callback 2093 returns False or throws an exception the 2094 patient switch is aborted. Callback code 2095 can rely on the patient still being active 2096 and to not go away until it returns. It 2097 is not passed any arguments and must return 2098 False or True. 2099 2100 2) Signal "pre_patient_unselection" is sent. 2101 This does not wait for nor check results. 2102 The keyword pk_identity contains the 2103 PK of the person being switched away 2104 from. 2105 2106 3) the current patient is unset (gmNull.cNull) 2107 2108 4) Signal "current_patient_unset" is sent 2109 At this point resetting GUI fields to 2110 empty should be done. The active patient 2111 is not there anymore. 2112 2113 This does not wait for nor check results. 2114 2115 5) The current patient is set to the new value. 2116 The new patient can also remain gmNull.cNull 2117 in case the calling code explicitely unset 2118 the current patient. 2119 2120 6) Signal "post_patient_selection" is sent. 2121 Code listening to this signal can 2122 assume that the new patient is 2123 already active. 2124 """
2125 - def __init__(self, patient=None, forced_reload=False):
2126 """Change or get currently active patient. 2127 2128 patient: 2129 * None: get currently active patient 2130 * -1: unset currently active patient 2131 * cPatient instance: set active patient if possible 2132 """ 2133 # make sure we do have a patient pointer 2134 try: 2135 self.patient 2136 except AttributeError: 2137 self.patient = gmNull.cNull() 2138 self.__register_interests() 2139 # set initial lock state, 2140 # this lock protects against activating another patient 2141 # when we are controlled from a remote application 2142 self.__lock_depth = 0 2143 # initialize callback state 2144 self.__callbacks_before_switching_away_from_patient = [] 2145 2146 # user wants copy of current patient 2147 if patient is None: 2148 return None 2149 2150 # do nothing if patient is locked 2151 if self.locked: 2152 _log.error('patient [%s] is locked, cannot change to [%s]' % (self.patient['pk_identity'], patient)) 2153 return None 2154 2155 # user wants to explicitly unset current patient 2156 if patient == -1: 2157 _log.debug('explicitly unsetting current patient') 2158 if not self.__run_callbacks_before_switching_away_from_patient(): 2159 _log.error('not unsetting current patient, at least one pre-change callback failed') 2160 return None 2161 self.__send_pre_unselection_notification() 2162 self.patient.cleanup() 2163 self.patient = gmNull.cNull() 2164 self.__send_unselection_notification() 2165 # give it some time 2166 time.sleep(0.5) 2167 self.__send_selection_notification() 2168 return None 2169 2170 # must be cPatient instance, then 2171 if not isinstance(patient, cPatient): 2172 _log.error('cannot set active patient to [%s], must be either None, -1 or cPatient instance' % str(patient)) 2173 raise TypeError('gmPerson.gmCurrentPatient.__init__(): <patient> must be None, -1 or cPatient instance but is: %s' % str(patient)) 2174 2175 # same ID, no change needed 2176 if (self.patient['pk_identity'] == patient['pk_identity']) and not forced_reload: 2177 return None 2178 2179 if patient['is_deleted']: 2180 _log.error('cannot set active patient to disabled dem.identity row: %s', patient) 2181 raise ValueError('gmPerson.gmCurrentPatient.__init__(): <patient> is disabled: %s' % patient) 2182 2183 # user wants different patient 2184 _log.info('patient change [%s] -> [%s] requested', self.patient['pk_identity'], patient['pk_identity']) 2185 2186 if not self.__run_callbacks_before_switching_away_from_patient(): 2187 _log.error('not changing current patient, at least one pre-change callback failed') 2188 return None 2189 2190 # everything seems swell 2191 self.__send_pre_unselection_notification() 2192 self.patient.cleanup() 2193 self.patient = gmNull.cNull() 2194 self.__send_unselection_notification() 2195 # give it some time 2196 time.sleep(0.5) 2197 self.patient = patient 2198 # for good measure ... 2199 # however, actually we want to get rid of that 2200 self.patient.emr 2201 self.__send_selection_notification() 2202 2203 return None
2204 2205 #--------------------------------------------------------
2206 - def __register_interests(self):
2207 gmDispatcher.connect(signal = 'gm_table_mod', receiver = self._on_database_signal)
2208 2209 #--------------------------------------------------------
2210 - def _on_database_signal(self, **kwds):
2211 # we don't have a patient: don't process signals 2212 if isinstance(self.patient, gmNull.cNull): 2213 return True 2214 2215 # we only care about identity and name changes 2216 if kwds['table'] not in ['dem.identity', 'dem.names']: 2217 return True 2218 2219 # signal is not about our patient: ignore signal 2220 if int(kwds['pk_identity']) != self.patient.ID: 2221 return True 2222 2223 if kwds['table'] == 'dem.identity': 2224 # we don't care about newly INSERTed or DELETEd patients 2225 if kwds['operation'] != 'UPDATE': 2226 return True 2227 2228 self.patient.refetch_payload() 2229 return True
2230 2231 #-------------------------------------------------------- 2232 # external API 2233 #--------------------------------------------------------
2234 - def register_before_switching_from_patient_callback(self, callback=None):
2235 # callbacks are run synchronously before 2236 # switching *away* from the current patient, 2237 # if a callback returns false the current 2238 # patient will not be switched away from, 2239 # callbacks will not be passed any arguments 2240 if not callable(callback): 2241 raise TypeError('callback [%s] not callable' % callback) 2242 2243 self.__callbacks_before_switching_away_from_patient.append(callback)
2244 2245 #--------------------------------------------------------
2246 - def _get_connected(self):
2247 return (not isinstance(self.patient, gmNull.cNull))
2248 2249 connected = property(_get_connected, lambda x:x) 2250 2251 #--------------------------------------------------------
2252 - def _get_locked(self):
2253 return (self.__lock_depth > 0)
2254
2255 - def _set_locked(self, locked):
2256 if locked: 2257 self.__lock_depth = self.__lock_depth + 1 2258 gmDispatcher.send(signal = 'patient_locked', sender = self.__class__.__name__) 2259 else: 2260 if self.__lock_depth == 0: 2261 _log.error('lock/unlock imbalance, tried to refcount lock depth below 0') 2262 return 2263 else: 2264 self.__lock_depth = self.__lock_depth - 1 2265 gmDispatcher.send(signal = 'patient_unlocked', sender = self.__class__.__name__)
2266 2267 locked = property(_get_locked, _set_locked) 2268 2269 #--------------------------------------------------------
2270 - def force_unlock(self):
2271 _log.info('forced patient unlock at lock depth [%s]' % self.__lock_depth) 2272 self.__lock_depth = 0 2273 gmDispatcher.send(signal = 'patient_unlocked', sender = self.__class__.__name__)
2274 2275 #-------------------------------------------------------- 2276 # patient change handling 2277 #--------------------------------------------------------
2279 if isinstance(self.patient, gmNull.cNull): 2280 return True 2281 2282 for call_back in self.__callbacks_before_switching_away_from_patient: 2283 try: 2284 successful = call_back() 2285 except Exception: 2286 _log.exception('callback [%s] failed', call_back) 2287 print("*** pre-change callback failed ***") 2288 print(type(call_back)) 2289 print(call_back) 2290 return False 2291 2292 if not successful: 2293 _log.error('callback [%s] returned False', call_back) 2294 return False 2295 2296 return True
2297 2298 #--------------------------------------------------------
2300 """Sends signal when current patient is about to be unset. 2301 2302 This does NOT wait for signal handlers to complete. 2303 """ 2304 kwargs = { 2305 'signal': 'pre_patient_unselection', 2306 'sender': self.__class__.__name__, 2307 'pk_identity': self.patient['pk_identity'] 2308 } 2309 gmDispatcher.send(**kwargs)
2310 2311 #--------------------------------------------------------
2313 """Sends signal when the previously active patient has 2314 been unset during a change of active patient. 2315 2316 This is the time to initialize GUI fields to empty values. 2317 2318 This does NOT wait for signal handlers to complete. 2319 """ 2320 kwargs = { 2321 'signal': 'current_patient_unset', 2322 'sender': self.__class__.__name__ 2323 } 2324 gmDispatcher.send(**kwargs)
2325 2326 #--------------------------------------------------------
2328 """Sends signal when another patient has actually been made active.""" 2329 kwargs = { 2330 'signal': 'post_patient_selection', 2331 'sender': self.__class__.__name__, 2332 'pk_identity': self.patient['pk_identity'], 2333 'current_patient': self 2334 } 2335 gmDispatcher.send(**kwargs)
2336 2337 #-------------------------------------------------------- 2338 # __getattr__ handling 2339 #--------------------------------------------------------
2340 - def __getattr__(self, attribute):
2341 # override __getattr__ here, not __getattribute__ because 2342 # the former is used _after_ ordinary attribute lookup 2343 # failed while the latter is applied _before_ ordinary 2344 # lookup (and is easy to drive into infinite recursion), 2345 # this is also why subsequent access to self.patient 2346 # simply returns the .patient member value :-) 2347 if attribute == 'patient': 2348 raise AttributeError 2349 if isinstance(self.patient, gmNull.cNull): 2350 _log.error("[%s]: cannot getattr(%s, '%s'), patient attribute not connected to a patient", self, self.patient, attribute) 2351 raise AttributeError("[%s]: cannot getattr(%s, '%s'), patient attribute not connected to a patient" % (self, self.patient, attribute)) 2352 return getattr(self.patient, attribute)
2353 2354 #-------------------------------------------------------- 2355 # __get/setitem__ handling 2356 #--------------------------------------------------------
2357 - def __getitem__(self, attribute = None):
2358 """Return any attribute if known how to retrieve it by proxy. 2359 """ 2360 return self.patient[attribute]
2361 2362 #--------------------------------------------------------
2363 - def __setitem__(self, attribute, value):
2364 self.patient[attribute] = value
2365 2366 #============================================================ 2367 # match providers 2368 #============================================================
2369 -class cMatchProvider_Provider(gmMatchProvider.cMatchProvider_SQL2):
2370 - def __init__(self):
2371 gmMatchProvider.cMatchProvider_SQL2.__init__( 2372 self, 2373 queries = [ 2374 """SELECT 2375 pk_staff AS data, 2376 short_alias || ' (' || coalesce(title, '') || ' ' || firstnames || ' ' || lastnames || ')' AS list_label, 2377 short_alias || ' (' || coalesce(title, '') || ' ' || firstnames || ' ' || lastnames || ')' AS field_label 2378 FROM dem.v_staff 2379 WHERE 2380 is_active AND ( 2381 short_alias %(fragment_condition)s OR 2382 firstnames %(fragment_condition)s OR 2383 lastnames %(fragment_condition)s OR 2384 db_user %(fragment_condition)s 2385 ) 2386 """ 2387 ] 2388 ) 2389 self.setThresholds(1, 2, 3)
2390 2391 #============================================================ 2392 # convenience functions 2393 #============================================================
2394 -def create_name(pk_person, firstnames, lastnames, active=False):
2395 queries = [{ 2396 'cmd': "select dem.add_name(%s, %s, %s, %s)", 2397 'args': [pk_person, firstnames, lastnames, active] 2398 }] 2399 rows, idx = gmPG2.run_rw_queries(queries=queries, return_data=True) 2400 name = cPersonName(aPK_obj = rows[0][0]) 2401 return name
2402 2403 #============================================================
2404 -def create_identity(gender=None, dob=None, lastnames=None, firstnames=None, comment=None):
2405 2406 cmd1 = "INSERT INTO dem.identity (gender, dob, comment) VALUES (%s, %s, %s)" 2407 cmd2 = """ 2408 INSERT INTO dem.names ( 2409 id_identity, lastnames, firstnames 2410 ) VALUES ( 2411 currval('dem.identity_pk_seq'), coalesce(%s, 'xxxDEFAULTxxx'), coalesce(%s, 'xxxDEFAULTxxx') 2412 ) RETURNING id_identity""" 2413 # cmd2 = u"select dem.add_name(currval('dem.identity_pk_seq')::integer, coalesce(%s, 'xxxDEFAULTxxx'), coalesce(%s, 'xxxDEFAULTxxx'), True)" 2414 try: 2415 rows, idx = gmPG2.run_rw_queries ( 2416 queries = [ 2417 {'cmd': cmd1, 'args': [gender, dob, comment]}, 2418 {'cmd': cmd2, 'args': [lastnames, firstnames]} 2419 #{'cmd': cmd2, 'args': [firstnames, lastnames]} 2420 ], 2421 return_data = True 2422 ) 2423 except Exception: 2424 _log.exception('cannot create identity') 2425 gmLog2.log_stack_trace() 2426 return None 2427 ident = cPerson(aPK_obj = rows[0][0]) 2428 gmHooks.run_hook_script(hook = 'post_person_creation') 2429 return ident
2430 2431 #============================================================
2432 -def disable_identity(pk_identity):
2433 _log.info('disabling identity [%s]', pk_identity) 2434 cmd = "UPDATE dem.identity SET deleted = true WHERE pk = %(pk)s" 2435 args = {'pk': pk_identity} 2436 gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}]) 2437 return True
2438 2439 #============================================================
2440 -def create_dummy_identity():
2441 cmd = "INSERT INTO dem.identity(gender) VALUES (NULL::text) RETURNING pk" 2442 rows, idx = gmPG2.run_rw_queries ( 2443 queries = [{'cmd': cmd}], 2444 return_data = True 2445 ) 2446 return gmDemographicRecord.cPerson(aPK_obj = rows[0][0])
2447 2448 #============================================================
2449 -def identity_exists(pk_identity):
2450 cmd = 'SELECT EXISTS(SELECT 1 FROM dem.identity where pk = %(pk)s)' 2451 args = {'pk': pk_identity} 2452 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}]) 2453 return rows[0][0]
2454 2455 #============================================================
2456 -def set_active_patient(patient=None, forced_reload=False):
2457 """Set active patient. 2458 2459 If patient is -1 the active patient will be UNset. 2460 """ 2461 if isinstance(patient, gmCurrentPatient): 2462 return True 2463 2464 if isinstance(patient, cPatient): 2465 pat = patient 2466 elif isinstance(patient, cPerson): 2467 pat = pat.as_patient 2468 elif patient == -1: 2469 pat = patient 2470 else: 2471 # maybe integer ? 2472 success, pk = gmTools.input2int(initial = patient, minval = 1) 2473 if not success: 2474 raise ValueError('<patient> must be either -1, >0, or a cPatient, cPerson or gmCurrentPatient instance, is: %s' % patient) 2475 # but also valid patient ID ? 2476 try: 2477 pat = cPatient(aPK_obj = pk) 2478 except Exception: 2479 _log.exception('identity [%s] not found' % patient) 2480 return False 2481 2482 # attempt to switch 2483 try: 2484 gmCurrentPatient(patient = pat, forced_reload = forced_reload) 2485 except Exception: 2486 _log.exception('error changing active patient to [%s]' % patient) 2487 return False 2488 2489 return True
2490 2491 #============================================================ 2492 # gender related 2493 #------------------------------------------------------------
2494 -def get_gender_list():
2495 """Retrieves the list of known genders from the database.""" 2496 global __gender_idx 2497 global __gender_list 2498 2499 if __gender_list is None: 2500 cmd = "SELECT tag, l10n_tag, label, l10n_label, sort_weight FROM dem.v_gender_labels ORDER BY sort_weight DESC" 2501 __gender_list, __gender_idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd}], get_col_idx = True) 2502 _log.debug('genders in database: %s' % __gender_list) 2503 2504 return (__gender_list, __gender_idx)
2505 2506 #------------------------------------------------------------ 2507 map_gender2mf = { 2508 'm': 'm', 2509 'f': 'f', 2510 'tf': 'f', 2511 'tm': 'm', 2512 'h': 'mf' 2513 } 2514 2515 # https://tools.ietf.org/html/rfc6350#section-6.2.7 2516 # M F O N U 2517 map_gender2vcard = { 2518 'm': 'M', 2519 'f': 'F', 2520 'tf': 'F', 2521 'tm': 'M', 2522 'h': 'O', 2523 None: 'U' 2524 } 2525 2526 #------------------------------------------------------------ 2527 # maps GNUmed related i18n-aware gender specifiers to a unicode symbol 2528 map_gender2symbol = { 2529 'm': '\u2642', 2530 'f': '\u2640', 2531 'tf': '\u26A5\u2640', 2532 # 'tf': u'\u2642\u2640-\u2640', 2533 'tm': '\u26A5\u2642', 2534 # 'tm': u'\u2642\u2640-\u2642', 2535 'h': '\u26A5', 2536 # 'h': u'\u2642\u2640', 2537 None: '?\u26A5?' 2538 } 2539 #------------------------------------------------------------
2540 -def map_gender2string(gender=None):
2541 """Maps GNUmed related i18n-aware gender specifiers to a human-readable string.""" 2542 2543 global __gender2string_map 2544 2545 if __gender2string_map is None: 2546 genders, idx = get_gender_list() 2547 __gender2string_map = { 2548 'm': _('male'), 2549 'f': _('female'), 2550 'tf': '', 2551 'tm': '', 2552 'h': '', 2553 None: _('unknown gender') 2554 } 2555 for g in genders: 2556 __gender2string_map[g[idx['l10n_tag']]] = g[idx['l10n_label']] 2557 __gender2string_map[g[idx['tag']]] = g[idx['l10n_label']] 2558 _log.debug('gender -> string mapping: %s' % __gender2string_map) 2559 2560 return __gender2string_map[gender]
2561 #------------------------------------------------------------
2562 -def map_gender2salutation(gender=None):
2563 """Maps GNUmed related i18n-aware gender specifiers to a human-readable salutation.""" 2564 2565 global __gender2salutation_map 2566 2567 if __gender2salutation_map is None: 2568 genders, idx = get_gender_list() 2569 __gender2salutation_map = { 2570 'm': _('Mr'), 2571 'f': _('Mrs'), 2572 'tf': '', 2573 'tm': '', 2574 'h': '', 2575 None: '' 2576 } 2577 for g in genders: 2578 __gender2salutation_map[g[idx['l10n_tag']]] = __gender2salutation_map[g[idx['tag']]] 2579 __gender2salutation_map[g[idx['label']]] = __gender2salutation_map[g[idx['tag']]] 2580 __gender2salutation_map[g[idx['l10n_label']]] = __gender2salutation_map[g[idx['tag']]] 2581 _log.debug('gender -> salutation mapping: %s' % __gender2salutation_map) 2582 2583 return __gender2salutation_map[gender]
2584 #------------------------------------------------------------
2585 -def map_firstnames2gender(firstnames=None):
2586 """Try getting the gender for the given first name.""" 2587 2588 if firstnames is None: 2589 return None 2590 2591 rows, idx = gmPG2.run_ro_queries(queries = [{ 2592 'cmd': "SELECT gender FROM dem.name_gender_map WHERE name ILIKE %(fn)s LIMIT 1", 2593 'args': {'fn': firstnames} 2594 }]) 2595 2596 if len(rows) == 0: 2597 return None 2598 2599 return rows[0][0]
2600 #============================================================
2601 -def get_person_IDs():
2602 cmd = 'SELECT pk FROM dem.identity' 2603 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd}], get_col_idx = False) 2604 return [ r[0] for r in rows ]
2605 2606 #============================================================
2607 -def get_persons_from_pks(pks=None):
2608 return [ cPerson(aPK_obj = pk) for pk in pks ]
2609 2610 #============================================================
2611 -def get_person_from_xdt(filename=None, encoding=None, dob_format=None):
2612 from Gnumed.business import gmXdtObjects 2613 return gmXdtObjects.read_person_from_xdt(filename=filename, encoding=encoding, dob_format=dob_format)
2614 2615 #============================================================
2616 -def get_persons_from_pracsoft_file(filename=None, encoding='ascii'):
2617 from Gnumed.business import gmPracSoftAU 2618 return gmPracSoftAU.read_persons_from_pracsoft_file(filename=filename, encoding=encoding)
2619 2620 #============================================================ 2621 # main/testing 2622 #============================================================ 2623 if __name__ == '__main__': 2624 2625 if len(sys.argv) == 1: 2626 sys.exit() 2627 2628 if sys.argv[1] != 'test': 2629 sys.exit() 2630 2631 import datetime 2632 2633 gmI18N.activate_locale() 2634 gmI18N.install_domain() 2635 gmDateTime.init() 2636 2637 #--------------------------------------------------------
2638 - def test_set_active_pat():
2639 2640 ident = cPerson(1) 2641 print("setting active patient with", ident) 2642 set_active_patient(patient=ident) 2643 2644 patient = cPatient(12) 2645 print("setting active patient with", patient) 2646 set_active_patient(patient=patient) 2647 2648 pat = gmCurrentPatient() 2649 print(pat['dob']) 2650 #pat['dob'] = 'test' 2651 2652 # staff = cStaff() 2653 # print("setting active patient with", staff) 2654 # set_active_patient(patient=staff) 2655 2656 print("setting active patient with -1") 2657 set_active_patient(patient=-1)
2658 #--------------------------------------------------------
2659 - def test_dto_person():
2660 dto = cDTO_person() 2661 dto.firstnames = 'Sepp' 2662 dto.lastnames = 'Herberger' 2663 dto.gender = 'male' 2664 dto.dob = pyDT.datetime.now(tz=gmDateTime.gmCurrentLocalTimezone) 2665 print(dto) 2666 2667 print(dto['firstnames']) 2668 print(dto['lastnames']) 2669 print(dto['gender']) 2670 print(dto['dob']) 2671 2672 for key in dto.keys(): 2673 print(key)
2674 #--------------------------------------------------------
2675 - def test_identity():
2676 # create patient 2677 print('\n\nCreating identity...') 2678 new_identity = create_identity(gender='m', dob='2005-01-01', lastnames='test lastnames', firstnames='test firstnames') 2679 print('Identity created: %s' % new_identity) 2680 2681 print('\nSetting title and gender...') 2682 new_identity['title'] = 'test title'; 2683 new_identity['gender'] = 'f'; 2684 new_identity.save_payload() 2685 print('Refetching identity from db: %s' % cPerson(aPK_obj=new_identity['pk_identity'])) 2686 2687 print('\nGetting all names...') 2688 for a_name in new_identity.get_names(): 2689 print(a_name) 2690 print('Active name: %s' % (new_identity.get_active_name())) 2691 print('Setting nickname...') 2692 new_identity.set_nickname(nickname='test nickname') 2693 print('Refetching all names...') 2694 for a_name in new_identity.get_names(): 2695 print(a_name) 2696 print('Active name: %s' % (new_identity.get_active_name())) 2697 2698 print('\nIdentity occupations: %s' % new_identity['occupations']) 2699 print('Creating identity occupation...') 2700 new_identity.link_occupation('test occupation') 2701 print('Identity occupations: %s' % new_identity['occupations']) 2702 2703 print('\nIdentity addresses: %s' % new_identity.get_addresses()) 2704 print('Creating identity address...') 2705 # make sure the state exists in the backend 2706 new_identity.link_address ( 2707 number = 'test 1234', 2708 street = 'test street', 2709 postcode = 'test postcode', 2710 urb = 'test urb', 2711 region_code = 'SN', 2712 country_code = 'DE' 2713 ) 2714 print('Identity addresses: %s' % new_identity.get_addresses()) 2715 2716 print('\nIdentity communications: %s' % new_identity.get_comm_channels()) 2717 print('Creating identity communication...') 2718 new_identity.link_comm_channel('homephone', '1234566') 2719 print('Identity communications: %s' % new_identity.get_comm_channels())
2720 #--------------------------------------------------------
2721 - def test_name():
2722 for pk in range(1,16): 2723 name = cPersonName(aPK_obj=pk) 2724 print(name.description) 2725 print(' ', name)
2726 #--------------------------------------------------------
2727 - def test_gender_list():
2728 genders, idx = get_gender_list() 2729 print("\n\nRetrieving gender enum (tag, label, weight):") 2730 for gender in genders: 2731 print("%s, %s, %s" % (gender[idx['tag']], gender[idx['l10n_label']], gender[idx['sort_weight']]))
2732 #--------------------------------------------------------
2733 - def test_export_area():
2734 person = cPerson(aPK_obj = 12) 2735 print(person) 2736 print(person.export_area) 2737 print(person.export_area.items)
2738 #--------------------------------------------------------
2739 - def test_ext_id():
2740 person = cPerson(aPK_obj = 9) 2741 print(person.get_external_ids(id_type='Fachgebiet', issuer='Ärztekammer'))
2742 #print(person.get_external_ids() 2743 #--------------------------------------------------------
2744 - def test_vcf():
2745 person = cPerson(aPK_obj = 12) 2746 print(person.export_as_vcard())
2747 2748 #--------------------------------------------------------
2749 - def test_mecard():
2750 person = cPerson(aPK_obj = 12) 2751 print(person.MECARD) 2752 mcf = person.export_as_mecard() 2753 print(mcf) 2754 #print(gmTools.create_qrcode(filename = mcf, qr_filename = None, verbose = True) 2755 print(gmTools.create_qrcode(text = person.MECARD, qr_filename = None, verbose = True))
2756 2757 #--------------------------------------------------------
2758 - def test_current_patient():
2759 pat = gmCurrentPatient() 2760 print("pat.emr", pat.emr)
2761 2762 #--------------------------------------------------------
2763 - def test_ext_id():
2764 person = cPerson(aPK_obj = 12) 2765 print(person.suggest_external_id(target = 'Orthanc'))
2766 2767 #--------------------------------------------------------
2768 - def test_assimilate_identity():
2769 patient = cPatient(12) 2770 set_active_patient(patient = patient) 2771 curr_pat = gmCurrentPatient() 2772 other_pat = cPerson(1111111) 2773 curr_pat.assimilate_identity(other_identity=None)
2774 2775 #-------------------------------------------------------- 2776 #test_dto_person() 2777 #test_identity() 2778 #test_set_active_pat() 2779 #test_search_by_dto() 2780 #test_name() 2781 #test_gender_list() 2782 2783 #map_gender2salutation('m') 2784 # module functions 2785 2786 #comms = get_comm_list() 2787 #print("\n\nRetrieving communication media enum (id, description): %s" % comms) 2788 #test_export_area() 2789 #test_ext_id() 2790 #test_vcf() 2791 test_mecard() 2792 #test_ext_id() 2793 #test_current_patient() 2794 #test_assimilate_identity() 2795 2796 #============================================================ 2797