The following dependencies appear not to be in Debian:

    [javac] src/jalview/datamodel/SequenceI.java:26: error: package fr.orsay.lri.varna.models.rna does not exist
    [javac] src/jalview/datamodel/Sequence.java:37: error: package fr.orsay.lri.varna.models.rna does not exist
    [javac] src/jalview/util/ImageMaker.java:39: error: package org.jfree.graphics2d.svg does not exist
    [javac] src/jalview/util/ImageMaker.java:40: error: package org.jfree.graphics2d.svg does not exist
    [javac] src/jalview/gui/DasSourceBrowser.java:50: error: package org.biodas.jdas.schema.sources does not exist
    [javac] src/jalview/gui/DasSourceBrowser.java:51: error: package org.biodas.jdas.schema.sources does not exist
    [javac] src/jalview/gui/DasSourceBrowser.java:52: error: package org.biodas.jdas.schema.sources does not exist
    [javac] src/jalview/gui/DasSourceBrowser.java:53: error: package org.biodas.jdas.schema.sources does not exist
    [javac] src/jalview/ws/DasSequenceFeatureFetcher.java:51: error: package org.biodas.jdas.client does not exist
    [javac] src/jalview/ws/DasSequenceFeatureFetcher.java:52: error: package org.biodas.jdas.client.adapters.features does not exist
    [javac] src/jalview/ws/DasSequenceFeatureFetcher.java:53: error: package org.biodas.jdas.client.adapters.features.DasGFFAdapter does not exist
    [javac] src/jalview/ws/DasSequenceFeatureFetcher.java:54: error: package org.biodas.jdas.client.threads does not exist
    [javac] src/jalview/ws/DasSequenceFeatureFetcher.java:55: error: package org.biodas.jdas.schema.features does not exist
    [javac] src/jalview/ws/DasSequenceFeatureFetcher.java:56: error: package org.biodas.jdas.schema.features does not exist
    [javac] src/jalview/ws/DasSequenceFeatureFetcher.java:57: error: package org.biodas.jdas.schema.features does not exist
    [javac] src/jalview/ws/DasSequenceFeatureFetcher.java:58: error: package org.biodas.jdas.schema.features does not exist
    [javac] src/jalview/ws/DasSequenceFeatureFetcher.java:59: error: package org.biodas.jdas.schema.features does not exist
    [javac] src/jalview/ws/DasSequenceFeatureFetcher.java:60: error: package org.biodas.jdas.schema.features does not exist
    [javac] src/jalview/ws/DasSequenceFeatureFetcher.java:61: error: package org.biodas.jdas.schema.features does not exist
    [javac] src/jalview/ws/DasSequenceFeatureFetcher.java:62: error: package org.biodas.jdas.schema.sources does not exist
    [javac] src/jalview/ws/dbsources/das/api/jalviewSourceI.java:27: error: package org.biodas.jdas.schema.sources does not exist
    [javac] src/jalview/ws/dbsources/das/api/jalviewSourceI.java:28: error: package org.biodas.jdas.schema.sources does not exist
    [javac] src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java:25: error: package org.biodas.jdas.client.threads does not exist
    [javac] src/jalview/datamodel/SecondaryStructureAnnotation.java:23: error: package fr.orsay.lri.varna.models.rna does not exist
    [javac] src/jalview/ext/htsjdk/HtsContigDb.java:23: error: package htsjdk.samtools does not exist
    [javac] src/jalview/ext/htsjdk/HtsContigDb.java:24: error: package htsjdk.samtools does not exist
    [javac] src/jalview/ext/htsjdk/HtsContigDb.java:25: error: package htsjdk.samtools.reference does not exist
    [javac] src/jalview/ext/htsjdk/HtsContigDb.java:26: error: package htsjdk.samtools.reference does not exist
    [javac] src/jalview/ext/htsjdk/HtsContigDb.java:27: error: package htsjdk.samtools.reference does not exist
    [javac] src/jalview/ext/htsjdk/HtsContigDb.java:28: error: package htsjdk.samtools.util does not exist
    [javac] src/jalview/ext/htsjdk/HtsContigDb.java:54: error: package htsjdk.samtools.reference does not exist
    [javac] src/jalview/ext/varna/RnaModel.java:26: error: package fr.orsay.lri.varna.models.rna does not exist
    [javac] src/jalview/gui/AppVarna.java:52: error: package fr.orsay.lri.varna does not exist
    [javac] src/jalview/gui/AppVarna.java:53: error: package fr.orsay.lri.varna.exceptions does not exist
    [javac] src/jalview/gui/AppVarna.java:54: error: package fr.orsay.lri.varna.exceptions does not exist
    [javac] src/jalview/gui/AppVarna.java:55: error: package fr.orsay.lri.varna.exceptions does not exist
    [javac] src/jalview/gui/AppVarna.java:56: error: package fr.orsay.lri.varna.interfaces does not exist
    [javac] src/jalview/gui/AppVarna.java:57: error: package fr.orsay.lri.varna.models does not exist
    [javac] src/jalview/gui/AppVarna.java:58: error: package fr.orsay.lri.varna.models does not exist
    [javac] src/jalview/gui/AppVarna.java:59: error: package fr.orsay.lri.varna.models.annotations does not exist
    [javac] src/jalview/gui/AppVarna.java:60: error: package fr.orsay.lri.varna.models.rna does not exist
    [javac] src/jalview/gui/AppVarna.java:61: error: package fr.orsay.lri.varna.models.rna does not exist
    [javac] src/jalview/gui/AppVarnaBinding.java:58: error: package fr.orsay.lri.varna does not exist
    [javac] src/jalview/gui/AppVarnaBinding.java:59: error: package fr.orsay.lri.varna.components does not exist
    [javac] src/jalview/gui/AppVarnaBinding.java:60: error: package fr.orsay.lri.varna.exceptions does not exist
    [javac] src/jalview/gui/AppVarnaBinding.java:61: error: package fr.orsay.lri.varna.exceptions does not exist
    [javac] src/jalview/gui/AppVarnaBinding.java:62: error: package fr.orsay.lri.varna.exceptions does not exist
    [javac] src/jalview/gui/AppVarnaBinding.java:63: error: package fr.orsay.lri.varna.models does not exist
    [javac] src/jalview/gui/AppVarnaBinding.java:64: error: package fr.orsay.lri.varna.models does not exist
    [javac] src/jalview/gui/AppVarnaBinding.java:65: error: package fr.orsay.lri.varna.models.rna does not exist
