# csi

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# Imports

hts_concat, utils

# Types

    CSI = ref object
      tbx*: tbx_t
      chroms*: seq[string]
      subtract: int
      meta: seq[uint8]

# Procs

    proc finalize_csi(c: CSI) {...}{.raises: [], tags: [].}

    proc open(csi: var CSI; base_path: string): bool {...}{.raises: [], tags: [].}

    proc new_csi(seq_col: int; start_col: int; end_col: int; one_based: bool;
                levels: int = 5; min_shift: int = 14): CSI {...}{.raises: [IOError],
        tags: [WriteIOEffect].}

    proc add(c: CSI; tid: int; start: int; stop: int; offset: uint64): int {...}{.inline, raises: [],
        tags: [].}

    proc finish(c: CSI; offset: uint64) {...}{.raises: [], tags: [].}

    proc save(c: CSI; path: string) {...}{.raises: [], tags: [].}

    proc idx_set_meta(csi: var CSI; idx: ptr hts_idx_t; tc: ptr tbx_conf_t;
                     chroms: seq[string]): int {...}{.raises: [], tags: [].}

    proc set_meta(c: var CSI): int {...}{.raises: [], tags: [].}