Initial alignment

--------------------------------------------------------------------------------
AATGGATGGCAAAATAGTTGTTCCATGAATACATCTCTAAAGAGCTTT
            AAAGTAGTTGTTCCATGAATACATCTCTAAAGAGCTTTGATGCTAATTT
              AGTTGTCCATGAATACATCTCTAAAGAGCTTTGATGCTAATTTAGTCAATTTTCAATACTGTA
                  ACATCTCTTAAAGAGCTTTGATGCTAATTTAGTCAAATT
                         AGAGCTTTGATGCTAATTTAGTCAAATTTTCAATACTGTACAATCTTCTCTAG
Final alignment

AATGGATGGCAAAATAGTTGTTCCATGAATACATCTC-TAAAGAGCTTTGATGCTAATTTAGTCAAATTTTCAATACTGT
.....................................*...........
          ...G.......................*......................
               .....*................*..........................*...............
                              .......T...............................
                                         .......................................
