// ==========================================================================
//                 SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2016, Knut Reinert, FU Berlin
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// ==========================================================================
// Author: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>
// ==========================================================================

#ifndef TESTS_BAM_IO_TEST_BAM_BAM_IO_CONTEXT_H_
#define TESTS_BAM_IO_TEST_BAM_BAM_IO_CONTEXT_H_

#include <seqan/basic.h>
#include <seqan/sequence.h>

#include <seqan/store.h>
#include <seqan/bam_io.h>

// TODO(weese:) the following 2 tests are insufficient

SEQAN_DEFINE_TEST(test_bam_io_bam_io_context_standalone)
{
    using namespace seqan;

    typedef String<CharString> TStrings;
    TStrings ns;
    NameStoreCache<TStrings> nsc(ns);
    BamIOContext<TStrings, NameStoreCache<TStrings>, Dependent<> > bamIOContext(ns, nsc);
    SEQAN_ASSERT_EQ(&ns, &contigNames(bamIOContext));
    SEQAN_ASSERT_EQ(&nsc, &contigNamesCache(bamIOContext));
}

SEQAN_DEFINE_TEST(test_bam_io_bam_io_context_fragment_store)
{
    using namespace seqan;

    typedef typename FragmentStore<>::TNameStore TNameStore;
    typedef NameStoreCache<TNameStore>           TNameStoreCache;

    FragmentStore<> store;
    BamIOContext<TNameStore, TNameStoreCache> bamIOContext(store.contigNameStore, store.contigNameStoreCache);
    SEQAN_ASSERT_EQ(&store.contigNameStore, &contigNames(bamIOContext));
    SEQAN_ASSERT_EQ(&store.contigNameStoreCache, &contigNamesCache(bamIOContext));
}

#endif  // TESTS_BAM_IO_TEST_BAM_BAM_IO_CONTEXT_H_
