# Manuals

A general description of GenomeTools design guidelines and development best practices can be found in the following document:

- GenomeTools developers guide (PDF)

We also provide user manuals for some specific tools in the GenomeTools:

- AnnotationSketch API documentation and manual (PDF)
- Genomediff user's manual (PDF)
- LTRdigest user's manual (PDF)
- LTRharvest user's manual (PDF)
- MetaGenomeThreader user's manual (PDF)
- Readjoiner user's manual (PDF)
- Repfind user's manual (PDF)
- Tagerator user's manual (PDF)
- Tallymer user's manual (PDF)
- Uniquesub user's manual (PDF)