NEXUS CLASS LIBRARY
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NCL Member Functions
Abbreviates
NxsString
Abbreviation
NxsToken
Add
NxsReader
AddQuotes
NxsString
AddRange
NxsSetReader
AddRows
NxsDiscreteMatrix
AddState
NxsDiscreteMatrix
AddState
NxsDiscreteMatrix
AddTail
NxsString
AddTaxonLabel
NxsTaxaBlock
AppendToComment
NxsToken
AppendToToken
NxsToken
ApplyDelset
NxsCharactersBlock
ApplyExSet
NxsAssumptionsBlock
ApplyExset
NxsCharactersBlock
ApplyIncludeset
NxsCharactersBlock
ApplyRestoreset
NxsCharactersBlock
AtEOF
NxsToken
AtEOL
NxsToken
BASICCMDLINE
BASICCMDLINE
~BASICCMDLINE
BASICCMDLINE
Begins
NxsToken
BlanksToUnderscores
NxsString
BlanksToUnderscores
NxsToken
BlockListEmpty
NxsReader
BreakPipeSeparatedList
NxsString
BriefReport
NxsTreesBlock
BuildCharPosArray
NxsCharactersBlock
Capitalize
NxsString
ChangeTaxonLabel
NxsTaxaBlock
CharLabelToNumber
NxsCharactersBlock
CharLabelToNumber
NxsBlock
CharLabelToNumber
NxsEmptyBlock
CharLabelToNumber
BASICCMDLINE
clear
NxsString
Consume
NxsCharactersBlock
ConvertToDouble
NxsString
ConvertToInt
NxsString
ConvertToLong
NxsString
ConvertToUnsigned
NxsString
CopyFrom
NxsDiscreteDatum
CopyStatesFromFirstTaxon
NxsDiscreteMatrix
DebugReportBlock
NxsReader
DebugReportBlock
MyNexusFileReader
DebugSaveMatrix
NxsDiscreteMatrix
DebugShowMatrix
NxsCharactersBlock
DeleteTaxon
NxsCharactersBlock
Detach
NxsReader
Disable
NxsBlock
DuplicateRow
NxsDiscreteMatrix
Enable
NxsBlock
endl
NxsString
EnteringBlock
NxsReader
EnteringBlock
MyNexusFileReader
EnteringBlock
BASICCMDLINE
Equals
NxsString
Equals
NxsToken
EqualsCaseInsensitive
NxsString
ExcludeCharacter
NxsCharactersBlock
Execute
NxsReader
ExecuteStarting
NxsReader
ExecuteStopping
NxsReader
ExitingBlock
NxsReader
ExitingBlock
MyNexusFileReader
ExitingBlock
BASICCMDLINE
FactoryDefaults
BASICCMDLINE
FileExists
MyNexusFileReader
FileExists
BASICCMDLINE
FindTaxon
NxsTaxaBlock
Flush
NxsDiscreteMatrix
GetActiveCharArray
NxsCharactersBlock
GetActiveTaxonArray
NxsCharactersBlock
GetCharLabel
NxsCharactersBlock
GetCharPos
NxsCharactersBlock
GetCharSet
NxsAssumptionsBlock
GetCharSetNames
NxsAssumptionsBlock
GetComment
NxsToken
GetCurlyBracketedToken
NxsToken
GetDataType
NxsCharactersBlock
GetDefCharSetName
NxsAssumptionsBlock
GetDefExSetName
NxsAssumptionsBlock
GetDefTaxSetName
NxsAssumptionsBlock
GetDiscreteDatum
NxsDiscreteMatrix
GetDistance
NxsDistancesBlock
GetDoubleQuotedToken
NxsToken
GetExSet
NxsAssumptionsBlock
GetExSetNames
NxsAssumptionsBlock
GetFileColumn
NxsToken
GetFileLine
NxsToken
GetFileName
BASICCMDLINE
GetFilePosition
NxsToken
GetGapSymbol
NxsCharactersBlock
GetID
NxsBlock
GetInternalRepresentation
NxsCharactersBlock
GetMatchcharSymbol
NxsCharactersBlock
GetMaxObsNumStates
NxsCharactersBlock
GetMaxTaxonLabelLength
NxsTaxaBlock
GetMissingSymbol
NxsCharactersBlock
GetMissingSymbol
NxsDistancesBlock
GetNChar
NxsCharactersBlock
GetNchar
NxsDistancesBlock
GetNCharTotal
NxsCharactersBlock
GetNextChar
NxsToken
GetNextToken
NxsToken
GetNTax
NxsCharactersBlock
GetNtax
NxsDistancesBlock
GetNTaxTotal
NxsCharactersBlock
GetNumActiveChar
NxsCharactersBlock
GetNumActiveTaxa
NxsCharactersBlock
GetNumCharSets
NxsAssumptionsBlock
GetNumDefaultTree
NxsTreesBlock
GetNumEliminated
NxsCharactersBlock
GetNumEquates
NxsCharactersBlock
GetNumExSets
NxsAssumptionsBlock
GetNumMatrixCols
NxsCharactersBlock
GetNumMatrixRows
NxsCharactersBlock
GetNumStates
NxsCharactersBlock
GetNumStates
NxsDiscreteMatrix
GetNumStates
NxsDiscreteMatrix
GetNumTaxonLabels
NxsTaxaBlock
GetNumTaxSets
NxsAssumptionsBlock
GetNumTrees
NxsTreesBlock
GetObsNumStates
NxsCharactersBlock
GetObsNumStates
NxsDiscreteMatrix
GetOrigCharIndex
NxsCharactersBlock
GetOrigCharNumber
NxsCharactersBlock
GetOrigTaxonIndex
NxsCharactersBlock
GetOrigTaxonNumber
NxsCharactersBlock
GetParentheticalToken
NxsToken
GetQuoted
NxsString
GetQuoted
NxsToken
GetState
NxsCharactersBlock
GetState
NxsDiscreteMatrix
GetState
NxsDiscreteMatrix
GetStateLabel
NxsCharactersBlock
GetSymbols
NxsCharactersBlock
GetTaxonLabel
NxsCharactersBlock
GetTaxonLabel
NxsTaxaBlock
GetTaxPos
NxsCharactersBlock
GetTaxSet
NxsAssumptionsBlock
GetTaxSetNames
NxsAssumptionsBlock
GetToken
NxsToken
GetTokenAsCStr
NxsToken
GetTokenLength
NxsToken
GetTokenReference
NxsToken
GetTokenValue
NxsSetReader
GetTranslatedTreeDescription
NxsTreesBlock
GetTreeDescription
NxsTreesBlock
GetTreeName
NxsTreesBlock
GetTriangle
NxsDistancesBlock
GetVecOfPossibleAbbrevMatches
NxsString
HandleCharlabels
NxsCharactersBlock
HandleCharset
NxsAssumptionsBlock
HandleCharstatelabels
NxsCharactersBlock
HandleDimensions
NxsCharactersBlock
HandleDimensionsCommand
NxsDistancesBlock
HandleEliminate
NxsCharactersBlock
HandleEndblock
NxsAssumptionsBlock
HandleEndblock
NxsCharactersBlock
HandleEndblock
NxsEmptyBlock
HandleEndblock
BASICCMDLINE
HandleExecute
BASICCMDLINE
HandleExset
NxsAssumptionsBlock
HandleFormat
NxsCharactersBlock
HandleFormatCommand
NxsDistancesBlock
HandleHelp
BASICCMDLINE
HandleLog
BASICCMDLINE
HandleMatrix
NxsCharactersBlock
HandleMatrixCommand
NxsDistancesBlock
HandleNextCommand
BASICCMDLINE
HandleNextPass
NxsDistancesBlock
HandleNextState
NxsCharactersBlock
HandleShow
BASICCMDLINE
HandleStatelabels
NxsCharactersBlock
HandleStdMatrix
NxsCharactersBlock
HandleTaxlabels
NxsCharactersBlock
HandleTaxlabelsCommand
NxsDistancesBlock
HandleTaxset
NxsAssumptionsBlock
HandleTokenState
NxsCharactersBlock
HandleTransposedMatrix
NxsCharactersBlock
HandleTreeDescription
NxsTreesBlock
IncludeCharacter
NxsCharactersBlock
IsActiveChar
NxsCharactersBlock
IsActiveTaxon
NxsCharactersBlock
IsADouble
NxsString
IsALong
NxsString
IsAlreadyDefined
NxsTaxaBlock
IsCapAbbreviation
NxsString
IsDefaultTree
NxsTreesBlock
IsDeleted
NxsCharactersBlock
IsDiagonal
NxsDistancesBlock
IsEliminated
NxsCharactersBlock
IsEmpty
NxsBlock
IsEnabled
NxsBlock
IsExcluded
NxsCharactersBlock
IsGap
NxsDiscreteMatrix
IsGap
NxsDiscreteMatrix
IsGapState
NxsCharactersBlock
IsInSymbols
NxsCharactersBlock
IsInterleave
NxsCharactersBlock
IsInterleave
NxsDistancesBlock
IsInVector
NxsString
IsLabels
NxsCharactersBlock
IsLabels
NxsDistancesBlock
IsLowerTriangular
NxsDistancesBlock
IsMissing
NxsDiscreteMatrix
IsMissing
NxsDiscreteMatrix
IsMissing
NxsDistancesBlock
IsMissingState
NxsCharactersBlock
IsNexusPunctuation
NxsString
IsPlusMinusToken
NxsToken
IsPolymorphic
NxsCharactersBlock
IsPolymorphic
NxsDiscreteMatrix
IsPolymorphic
NxsDiscreteMatrix
IsPunctuation
NxsToken
IsPunctuationToken
NxsToken
IsRectangular
NxsDistancesBlock
IsRespectCase
NxsCharactersBlock
IsRootedTree
NxsTreesBlock
IsStdAbbreviation
NxsString
IsTokens
NxsCharactersBlock
IsTranspose
NxsCharactersBlock
IsUpperTriangular
NxsDistancesBlock
IsUserSupplied
NxsBlock
IsWhitespace
NxsToken
IsWhitespaceToken
NxsToken
MyAssumptionsBlock
MyAssumptionsBlock
MyCharactersBlock
MyCharactersBlock
MyDataBlock
MyDataBlock
MyNexusFileReader
MyNexusFileReader
~MyNexusFileReader
MyNexusFileReader
MyNexusToken
MyNexusToken
MyToken
MyToken
NCLCopyrightNotice
NxsReader
NCLHomePageURL
NxsReader
NCLNameAndVersion
NxsReader
NeedsQuotes
NxsTaxaBlock
NexusError
NxsReader
NexusError
MyNexusFileReader
NexusError
BASICCMDLINE
NStrCaseInsensitiveEquals
NStrCaseInsensitiveEquals
NStrCaseSensitiveEquals
NStrCaseSensitiveEquals
NumberThenWord
NxsString
NxsAssumptionsBlock
NxsAssumptionsBlock
~NxsAssumptionsBlock
NxsAssumptionsBlock
NxsBlock
NxsBlock
~NxsBlock
NxsBlock
NxsCharactersBlock
NxsCharactersBlock
~NxsCharactersBlock
NxsCharactersBlock
NxsDataBlock
NxsDataBlock
NxsDiscreteDatum
NxsDiscreteDatum
~NxsDiscreteDatum
NxsDiscreteDatum
NxsDiscreteMatrix
NxsDiscreteMatrix
~NxsDiscreteMatrix
NxsDiscreteMatrix
NxsDistanceDatum
NxsDistanceDatum
~NxsDistanceDatum
NxsDistanceDatum
NxsDistancesBlock
NxsDistancesBlock
~NxsDistancesBlock
NxsDistancesBlock
NxsEmptyBlock
NxsEmptyBlock
~NxsEmptyBlock
NxsEmptyBlock
NxsException
NxsException
NxsException
NxsException
NxsReader
NxsReader
~NxsReader
NxsReader
NxsSetReader
NxsSetReader
NxsString
NxsString
NxsString
NxsString
NxsString
NxsString
NxsTaxaBlock
NxsTaxaBlock
~NxsTaxaBlock
NxsTaxaBlock
NxsToken
NxsToken
~NxsToken
NxsToken
NxsTreesBlock
NxsTreesBlock
~NxsTreesBlock
NxsTreesBlock
operator()
NStrCaseInsensitiveEquals
operator()
NStrCaseSensitiveEquals
operator()
NxsStringEqual
operator+=
NxsString
operator+=
NxsString
operator+=
NxsString
operator+=
NxsString
operator+=
NxsString
operator+=
NxsString
operator+=
NxsString
operator+=
NxsString
operator<<
NxsString
operator<<
NxsString
operator<<
NxsString
operator<<
NxsString
operator<<
NxsString
operator<<
NxsString
operator<<
NxsString
operator<<
NxsString
operator<<
NxsString
operator<<
NxsString
operator=
NxsString
operator=
NxsString
OutputComment
NxsToken
OutputComment
NxsReader
OutputComment
MyToken
OutputComment
MyNexusFileReader
OutputComment
MyNexusToken
PositionInBlockList
NxsReader
PositionInSymbols
NxsCharactersBlock
PreprocessNextCommand
BASICCMDLINE
PrintF
NxsString
PrintMessage
BASICCMDLINE
PurgeBlocks
BASICCMDLINE
p_str
NxsString
QuotesNeeded
NxsString
Read
NxsAssumptionsBlock
Read
NxsCharactersBlock
Read
NxsBlock
Read
NxsTaxaBlock
Read
NxsDistancesBlock
Read
NxsEmptyBlock
Read
NxsTreesBlock
Read
BASICCMDLINE
Reassign
NxsReader
ReplaceTaxaBlockPtr
NxsAssumptionsBlock
ReplaceTaxaBlockPtr
NxsTreesBlock
ReplaceToken
NxsToken
Report
NxsAssumptionsBlock
Report
NxsCharactersBlock
Report
NxsBlock
Report
NxsTaxaBlock
Report
NxsDistancesBlock
Report
NxsEmptyBlock
Report
NxsTreesBlock
Report
BASICCMDLINE
Reset
NxsAssumptionsBlock
Reset
NxsCharactersBlock
Reset
NxsBlock
Reset
NxsTaxaBlock
Reset
NxsDataBlock
Reset
NxsDiscreteMatrix
Reset
NxsDistancesBlock
Reset
NxsEmptyBlock
Reset
NxsTreesBlock
Reset
BASICCMDLINE
ResetSymbols
NxsCharactersBlock
ResetToken
NxsToken
RestoreTaxon
NxsCharactersBlock
RightJustifyDbl
NxsString
RightJustifyLong
NxsString
RightJustifyString
NxsString
Run
NxsSetReader
Run
BASICCMDLINE
SetCallback
NxsAssumptionsBlock
SetDistance
NxsDistancesBlock
SetGap
NxsDiscreteMatrix
SetGap
NxsDiscreteMatrix
SetLabileFlagBit
NxsToken
SetMissing
NxsDiscreteMatrix
SetMissing
NxsDiscreteMatrix
SetMissing
NxsDistancesBlock
SetNchar
NxsDistancesBlock
SetNexus
NxsBlock
SetNtax
NxsTaxaBlock
SetPolymorphic
NxsDiscreteMatrix
SetPolymorphic
NxsDiscreteMatrix
SetSpecialPunctuationCharacter
NxsToken
SetState
NxsDiscreteMatrix
SetState
NxsDiscreteMatrix
SetToShortestAbbreviation
NxsString
ShortenTo
NxsString
ShowStateLabels
NxsCharactersBlock
ShowStates
NxsCharactersBlock
SkippingBlock
NxsReader
SkippingBlock
MyNexusFileReader
SkippingBlock
BASICCMDLINE
SkippingCommand
NxsBlock
SkippingCommand
NxsEmptyBlock
SkippingCommand
MyCharactersBlock
SkippingCommand
MyDataBlock
SkippingCommand
MyAssumptionsBlock
SkippingCommand
BASICCMDLINE
SkippingDisabledBlock
NxsReader
SkippingDisabledBlock
MyNexusFileReader
SkippingDisabledBlock
BASICCMDLINE
StoppedOn
NxsToken
StripWhitespace
NxsToken
TaxonLabelToNumber
NxsAssumptionsBlock
TaxonLabelToNumber
NxsCharactersBlock
TaxonLabelToNumber
NxsBlock
TaxonLabelToNumber
NxsEmptyBlock
TaxonLabelToNumber
BASICCMDLINE
ToHex
NxsString
ToLower
NxsString
ToUpper
NxsString
ToUpper
NxsToken
TransferTo
NxsDataBlock
UnderscoresToBlanks
NxsString
UpperCasePrefix
NxsString
UserQuery
BASICCMDLINE
Write
NxsToken
Writeln
NxsToken
WriteStates
NxsCharactersBlock