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 * $Id: filter.hpp 1800 2011-07-15 11:45:31Z marton $
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#ifndef PCL_FILTERS_IMPL_FILTER_INDICES_H_
#define PCL_FILTERS_IMPL_FILTER_INDICES_H_

#include <pcl/pcl_macros.h>
#include <pcl/filters/filter_indices.h>

template <typename PointT> void
pcl::removeNaNFromPointCloud (const pcl::PointCloud<PointT> &cloud_in,
                              std::vector<int> &index)
{
  // Reserve enough space for the indices
  index.resize (cloud_in.points.size ());

  // If the data is dense, we don't need to check for NaN
  if (cloud_in.is_dense)
  {
    for (int j = 0; j < static_cast<int> (cloud_in.points.size ()); ++j)
      index[j] = j;
  }
  else
  {
    int j = 0;
    for (int i = 0; i < static_cast<int> (cloud_in.points.size ()); ++i)
    {
      if (!std::isfinite (cloud_in.points[i].x) || 
          !std::isfinite (cloud_in.points[i].y) || 
          !std::isfinite (cloud_in.points[i].z))
        continue;
      index[j] = i;
      j++;
    }
    if (j != static_cast<int> (cloud_in.points.size ()))
    {
      // Resize to the correct size
      index.resize (j);
    }
  }
}

template<typename PointT> void
pcl::FilterIndices<PointT>::applyFilter (PointCloud &output)
{
  std::vector<int> indices;
  if (keep_organized_)
  {
    if (!extract_removed_indices_)
    {
      PCL_WARN ("[pcl::FilterIndices<PointT>::applyFilter] extract_removed_indices_ was set to 'true' to keep the point cloud organized.\n");
      extract_removed_indices_ = true;
    }
    applyFilter (indices);

    output = *input_;

    // To preserve legacy behavior, only coordinates xyz are filtered.
    // Copying a PointXYZ initialized with the user_filter_value_ into a generic
    // PointT, ensures only the xyz coordinates, if they exist at destination,
    // are overwritten.
    const PointXYZ ufv (user_filter_value_, user_filter_value_, user_filter_value_);
    for (const auto ri : *removed_indices_)  // ri = removed index
      copyPoint(ufv, output[ri]);
    if (!std::isfinite (user_filter_value_))
      output.is_dense = false;
  }
  else
  {
    output.is_dense = true;
    applyFilter (indices);
    pcl::copyPointCloud (*input_, indices, output);
  }
}


#define PCL_INSTANTIATE_removeNanFromPointCloud(T) template PCL_EXPORTS void pcl::removeNaNFromPointCloud<T>(const pcl::PointCloud<T>&, std::vector<int>&);
#define PCL_INSTANTIATE_FilterIndices(T) template class PCL_EXPORTS  pcl::FilterIndices<T>;

#endif    // PCL_FILTERS_IMPL_FILTER_INDICES_H_

