Projection distance

projection_dist(dm, new_dcs = NULL, ..., new_data, verbose = FALSE)

Arguments

dm

A DiffusionMap object.

new_dcs

Diffusion component matrix of which to calculate the distance to the data.

...

Passed to proxy::dist if new_data was passed.

new_data

New data points to project into the diffusion map. Can be a matrix, data.frame, ExpressionSet, or SingleCellExperiment.

verbose

If TRUE, log additional info to the console.

Examples

data(guo_norm) g2_32 <- guo_norm[, guo_norm$num_cells < 64] g64 <- guo_norm[, guo_norm$num_cells == 64] dm <- DiffusionMap(g2_32) d <- projection_dist(dm, new_data = g64)