subread (1.5.0-p1+dfsg-1) unstable; urgency=medium

  * Imported Upstream version 1.5.0-p1+dfsg
  * d/patches: refresh and remove applied patches

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Tue, 05 Jan 2016 15:58:47 +0100

subread (1.5.0+dfsg-1) unstable; urgency=medium

  * Imported Upstream version 1.5.0+dfsg
  * no PDF documentation in this release
  * removed globalReassembly and subtools binaries, added "repair" tool

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Fri, 06 Nov 2015 15:05:00 +0100

subread (1.4.6-p5+dfsg-1) unstable; urgency=medium

  * Imported Upstream version 1.4.6-p5+dfsg
  * Build and install SubreadUsersGuide.pdf

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Sat, 05 Sep 2015 12:35:30 +0200

subread (1.4.6-p4+dfsg-1) unstable; urgency=medium

  * d/patches/arch_specific_flags.patch: set the optimization level 
    to -03  because -O levels higher than 3 have no effect.
  * Imported Upstream version 1.4.6-p4+dfsg

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Mon, 06 Jul 2015 15:51:55 +0200

subread (1.4.6-p3+dfsg-2) unstable; urgency=medium

  * d/changelog: upload to unstable, forgot to include the amd64 architecture 
    in d/contorl
  * d/control: added amd64 to Architecture

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Thu, 21 May 2015 20:56:14 +0200

subread (1.4.6-p3+dfsg-1) unstable; urgency=medium

  * d/changelog: upload to unstable
  * d/rules: enable -fsigned-char for all architectures
  * d/patches/arch_specific_flags.patch: use -O2 instead of -O9
  * d/control: not building for powerpc, mips, s390x, see d/README.source
  * d/README.source: merge with d/README.Debian-source describe the reason
    for not building on some architectures
  * Imported Upstream version 1.4.6-p3+dfsg

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Tue, 19 May 2015 13:51:49 +0200

subread (1.4.6-p2+dfsg-4) experimental; urgency=medium

  * d/rules: add -msse3 and -mtune=generic for i386/amd64 
  * d/patches: merge hardening and gcc_flags_cleanup patches
  * d/patches: updated and renamed getopt4exactSNP.patch to getopt.patch 
     fixed 2 more issues with wrong assignment for the getopt_long function

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Mon, 18 May 2015 17:46:15 +0200

subread (1.4.6-p2+dfsg-3) experimental; urgency=medium

  * d/patches/getopt4exactSNP.patch: attempt to fix #784929

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Wed, 13 May 2015 22:22:24 +0200

subread (1.4.6-p2+dfsg-2) unstable; urgency=medium

  * d/patches/gcc_flags_cleanup.patch: remove -mtune=core2 and mmmx,msse* flags
    Closes: #784780 
  * d/rules: use override_dh_installexamples-indep, Closes: #784782 
  * d/README.Debian-source: mention doc/SubreadUserGuide.pdf removal

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Sun, 10 May 2015 10:43:19 +0200

subread (1.4.6-p2+dfsg-1) unstable; urgency=medium

  * Actual first upload after fixing ftpmaster issues
    Closes: #779014
  * d/copyright: exclude pdf without source files 
  * d/patches: add Descriptions 
  * d/watch: use repacksuffix to add +dfsg suffix
  * Imported Upstream version 1.4.6-p2+dfsg

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Thu, 07 May 2015 21:13:48 +0200

subread (1.4.6-p2-1) UNRELEASED; urgency=medium

  * Imported Upstream version 1.4.6-p2
  * fixed regexps for man pages cleanup
  * d/README.Debian: add note about subread user guide url
  * d/doc-base: remove, as no documentation supplied with the package 
  * d/subread.docs: remove SubreadUserGuide.pdf 

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Thu, 23 Apr 2015 10:22:03 +0200

subread (1.4.6-p1-1) unstable; urgency=low

  * Initial release. Closes: #779014

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Fri, 20 Feb 2015 10:48:06 +0100
